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Name : PB2503_01207 (PB2503_01207) Accession : YP_003853462.1 Strain : Parvularcula bermudensis HTCC2503 Genome accession: NC_014414 Putative virulence/resistance : Virulence Product : endopeptidase Clp: ATP-binding subunit B, clpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 147281 - 149944 bp Length : 2664 bp Strand : - Note : - DNA sequence : ATGAATTTTGACAAATACACGGACCGCGCCAAGGGCCTGGTCCAGGCGGCGCAGACCATTGCGATCCGGGAAAATCACCA GCAGATTACGCCCTTCCACGTTCTGAAGGCATTGCTTGACGACAGTGAAGGGCTTGCGGCGAATCTGATGCGCCGTGCCG GGGGCGACCCTGATCTGGCGCTTACCGCCGTCGATCAGGCATTGGCAAAATTGCCGACCGTTCAAGGGGCGAACGCACAG GTCTATATGGCCCAGCCCACCGCCCGTATTTTTACCCAGGCCGAGGATATCGCGAAAAAGGCGGGCGACAGCTATGTCAC CGCAGAGCGTCTACTCGTCGCTCTGGCGCTTGAGGGGGAAACGGCGGCGACCTTGAAAAAGGCGGGGCTGTCCCCTCAAT CACTCAATACAGCCATCAATGAAATCCGCAAAGGTCGTACAGCGGATAATGCGAATGCGGAGCAGGGATATGACGCGCTC AAACGCTATGCGCGTGATCTTACCGACGCCGCGCGCGAAGGGAAGCTCGATCCGATCATCGGCCGTGACGAAGAAATCCG CCGAGCCATGCAAATCCTGTCCCGCCGTACCAAGAACAACCCCGTTCTGATCGGTGAACCGGGGGTGGGTAAGACCGCCA TCGCCGAGGGGCTGGCCTTGCGGATTGTCAATGGCGATGTGCCTGAGAGCCTCAAGGATAAACGGCTCCTCGCCCTCGAC CTTGGGTCTCTCATCGCGGGGGCCAAATATCGGGGTGAATTCGAGGAGCGGCTGAAGGCCGTGTTGTCGGAGACGACATC GGCGGAGGGGCAAATCATTCTCTTCATCGATGAGATGCATACCTTGGTGGGGGCCGGGAAGACCGACGGCGCCATGGATG CCTCCAACCTGCTGAAGCCCGCGCTGGCCCGCGGGGAATTGCACTGCATCGGCGCGACAACCCTCGACGAATATCGTAAA TATGTCGAGAAGGATGCGGCCCTTGCGCGTCGCTTCCAGGCTGTGTTCGTCAGTGAGCCAACGGTTGCCGATACGATCTC TATCCTTCGTGGGCTGAAAGAGAAATATGAGTTGCACCATGGCGTGCGGATTGCCGACAGCGCGATTGTTTCCGCGGCGA CTTTATCGAACCGGTATATTACCGATCGTTTTTTGCCCGATAAGGCGATTGACCTTGTCGATGAGGCGGCCTCACGGCTC CGTATGGCCGTGGATTCAAAGCCCGAGGAGCTCGATGCCCTCGATCGGCAGATCATCCAGATGAAGATCGAGCGGGAGGC CCTTCTCAAAGAGGACGATACCGCGTCGAAAGATCGGTTGACGGATTTGGAGAAGGGCCTTGCCGCGCTTGAGGAGCGGT CGGCCGAGCTGACGGCCGCCTGGCAGGCGGAAAAAGAGGCGCTGGCCTCGACCACGTCAGTCAAGGAAGAGCTCGACAGA GCCCGGCAGGATCTGGTGGACGCCGAACGGCGGGGCGATTTGGCCAAGGCCTCAGAGTTGAAATATGGCCAGATCCCGGC CCTGGAGCGTCGGCTTGAGGAGGCGGAGGGCCGTCAGGATGCGGACGGGGTCAATTCAGGTCTTGTGCAAGAGGTCGTGG ATAGCGAAACGATCGCGCAGGTCGTTTCGAAATGGACCGGTATCCCCGTCGACAAGATGCTTGAGGGGGAGCGTGACAAA CTCCTCCGTATGGAGGAGGTTCTCCACTCTCGCGTGATCGGACAGGAGGAGGCGGTGACCGCCGTATCCGCCGCCGTCAG GCGCGCGCGGGCGGGATTGCAGGATCCTAACCGTCCCCTTGGATCGTTCCTCTTCCTGGGCCCGACAGGGGTTGGCAAGA CCGAGCTGACAAAGGCCTTGGCGGCGTTTCTGTTCGATGACGATCAGGCCATTGCGCGGATCGATATGTCGGAGTTCATG GAAAAGCACGCGGTCAGTCGCCTGATTGGCGCGCCTCCCGGCTATGTCGGCTATGAGGAGGGGGGCGTGTTGACCGAGGC TGTCCGTCGGCGCCCTTATCAAGTGATCCTGTTCGATGAGGTGGAAAAGGCGCACCCGGATGTATTCAATATCCTCCTTC AGGTCTTGGACGATGGCCGCCTGACGGATGGTCAGGGGCGGGTGGTCGATTTCAAGAATACGATCATTATCCTCACCTCC AATCTTGGCGCGGAGTATATGACCGGCCTTGCCGAAGGACAGACGGTAGAGACGGTACGGGAGCAGGTGATGGCCGCCGT CAGAAGTGCGTTCCGGCCGGAATTCCTCAATCGTCTCGATGAGATCATTCTTTTCTCGCGTCTTGAGCGAGATCAGATGG GCGGTATCGTCGATATCCAGATCGCGCGGCTACAATCGCTTCTCGATGATCGAAAGATCGTTATCGAGATTGATGACGCG GCTCGGCAGTGGCTCGCGCAATCGGGATATGATCCAGCCTTCGGTGCGCGCCCGCTCAAGCGGGTGATCCAAAAGGCCGT GCAAGACCCGCTTGCAGAGCGTCTATTGGCGGGCCGCATTTCCGATGGAGCAACGTTGCATCTGTCTGCGGATGATACGG GGTTAATTCTCGATGGGGAGCATTTGACGAGTCGGAAAGCCTTCTCCCTCGGGACCGTGCCGACATCCGATGCCGGATCC CCCCCAACCCACATGCTAAATTGA Protein sequence : MNFDKYTDRAKGLVQAAQTIAIRENHQQITPFHVLKALLDDSEGLAANLMRRAGGDPDLALTAVDQALAKLPTVQGANAQ VYMAQPTARIFTQAEDIAKKAGDSYVTAERLLVALALEGETAATLKKAGLSPQSLNTAINEIRKGRTADNANAEQGYDAL KRYARDLTDAAREGKLDPIIGRDEEIRRAMQILSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLLALD LGSLIAGAKYRGEFEERLKAVLSETTSAEGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCIGATTLDEYRK YVEKDAALARRFQAVFVSEPTVADTISILRGLKEKYELHHGVRIADSAIVSAATLSNRYITDRFLPDKAIDLVDEAASRL RMAVDSKPEELDALDRQIIQMKIEREALLKEDDTASKDRLTDLEKGLAALEERSAELTAAWQAEKEALASTTSVKEELDR ARQDLVDAERRGDLAKASELKYGQIPALERRLEEAEGRQDADGVNSGLVQEVVDSETIAQVVSKWTGIPVDKMLEGERDK LLRMEEVLHSRVIGQEEAVTAVSAAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAAFLFDDDQAIARIDMSEFM EKHAVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEVEKAHPDVFNILLQVLDDGRLTDGQGRVVDFKNTIIILTS NLGAEYMTGLAEGQTVETVREQVMAAVRSAFRPEFLNRLDEIILFSRLERDQMGGIVDIQIARLQSLLDDRKIVIEIDDA ARQWLAQSGYDPAFGARPLKRVIQKAVQDPLAERLLAGRISDGATLHLSADDTGLILDGEHLTSRKAFSLGTVPTSDAGS PPTHMLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-109 | 44 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-109 | 44 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-101 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PB2503_01207 | YP_003853462.1 | endopeptidase Clp: ATP-binding subunit B, clpB | VFG2084 | Protein | 3e-109 | 44 |
| PB2503_01207 | YP_003853462.1 | endopeptidase Clp: ATP-binding subunit B, clpB | VFG2076 | Protein | 5e-114 | 43 |
