Gene Information

Name : Tthe_1440 (Tthe_1440)
Accession : YP_003852038.1
Strain : Thermoanaerobacterium thermosaccharolyticum DSM 571
Genome accession: NC_014410
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1445799 - 1446548 bp
Length : 750 bp
Strand : -
Note : KEGG: tpd:Teth39_1241 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGATACATATAAAAAAAATTAGTGGGGTTGTGCTAATTTCATTAATTCTGTTGACTAAAGTTACATATGCAGCATCGAG
TTCTGCTTCGCCACTGATTACAATAAATGCACCATCAGGTCCGAATGACATAACATCGAGTATTCAGATAGTTCTTCTTT
TAACTGTATTAACTTTAGCACCTTCAATACTCATAATGATGACTTCTTTTACAAGAATTATTGTTGTCTTATCATTTTTG
AGGAATGCTTTGGGTTTACAGCAAATGCCACCTAATCAAGTTTTAATTGGATTGTCCTTATTTTTGACGTTTTTTATAAT
GGCACCTGTTGGTGTGCAAATAAACAATGATTCAATACAACCCTATATGCAAGGGAAAATAACCCCACAAGTAGCATATG
TCAAAGCAAGAGATCCTTTAAAAAATTTTATGTTAAAACAGACCAGAAAAAATGATTTGAATTTATTTATAAATCTGGCT
AAAATTAAAGTAAAAAGTGTGAATGACATACCATTAAGAGTTGTTATTCCTTCGTTTATTATTAGTGAGCTTAAGACGGC
ATTTGAGATTGGTTTTATTATATACATACCATTTTTGATTATAGACATGGTTGTTGCCAGTGTATTAATGTCCATGGGAA
TGTTTATGTTACCGCCTGTACTTATTTCTTTGCCATTTAAACTTTTACTGTTTATTTTAGTAGATGGCTGGAATATATTA
GCCAAATCATTGGTAATAGGTTTTAGATAA

Protein sequence : 
MIHIKKISGVVLISLILLTKVTYAASSSASPLITINAPSGPNDITSSIQIVLLLTVLTLAPSILIMMTSFTRIIVVLSFL
RNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSIQPYMQGKITPQVAYVKARDPLKNFMLKQTRKNDLNLFINLA
KIKVKSVNDIPLRVVIPSFIISELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNIL
AKSLVIGFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-29 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-29 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-29 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-29 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-23 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-23 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-22 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-23 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 41
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-26 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-45 58
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-47 54
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-47 53
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-44 53
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG0519 Protein 3e-23 41
Tthe_1440 YP_003852038.1 flagellar biosynthetic protein FliP VFG0044 Protein 3e-28 41