Gene Information

Name : Galf_0370 (Galf_0370)
Accession : YP_003846178.1
Strain : Gallionella capsiferriformans ES-2
Genome accession: NC_014394
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 416043 - 417437 bp
Length : 1395 bp
Strand : +
Note : KEGG: slt:Slit_2633 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGAACATGGCTGATAAAACAAAACGCGAATTTCAGTCGGGCTCAGTCAAGGGGGCCGCACTGCAGCAATCGGTGCTTTT
GGTCGATGACGAGCCTGATATTCTGGAATTGCTGGAAATGACCCTGCTTAAAATGGGGTTGGTGGTGGATAAGGCCGCTT
GCGTGCAGGAAGCGCTCGCCAAGCTGGCCGCCAATCGATATGACTTGTGTTTGACGGACATGCGTATGCCCGATGGGGAC
GGTCTCGAAGTGGTCAAATACATCGCCGCTCACAGTCTCGATGTGCCGGTTGCGGTGATTACTGCGCATGGCAATATGGA
AAATGCGATCACGGTACTCAAGGCCGGTGCCTTTGATTATCTCGCCAAGCCGCTGTCGCTCGAACAATTGCGCACGCTGG
TGAAATCGGCCCTCAGCATGCCGCAGCCCAGTCCTTCCGCCGATAAGCTCTTGCTGGGTAACGCGCCGGCCATGCAGAAA
GTGCGTGATTTGATCGAGCGCGTCGCGCGTAGTCAGGCGCCGGTATATATCAGCGGGGAGTCGGGGAGCGGCAAGGAACT
CGCTGCGCGCCTGATCGTGCAGAGTGGTCCGCGCAGTGATCAGCCGGTGATCGCGGTCAACTGCGGCGCGATTCCCGAAA
ACTTGATGGAGAGTGAATTTTTCGGTTATAAAAAAGGCGCTTTTACCGGCGCTGATAAAGATCGTGACGGATTTTTTCAG
GCGGCGAACGGCGGCACGTTATTTCTGGATGAGGTTGCGGATTTACCTTTGACGATGCAGGTCAAACTGCTGCGTGTGAT
ACAGGAAAAGCGCGTCAGAAAAGTAGGTTCAACGACGGAAGAGCCGGTGGATGTGCGTCTGATCAGTGCGACGCACAAAG
ATCTGGCCGAGCGTGTCAAGTCGGGCCAGTTCCGTCAGGATTTATATTATCGTTTGAACGTGATTCCGATCCAGATGCCC
AGCTTGCGCGAATTGCGTGAGGATATCGCTCAAATCGCTCAGCAGGTGCTCAACCGCCTGCGCGCAGGGGTGCCAACACG
CTTCTCGGATGAGGCGTTGCGCGTGCTGCAGCAGTATGACTTTCCCGGGAATGTCCGTGAGCTGGAAAACATCATCGAGC
GCGCCCTGGCGCTGTGTTCGGAGGGCGTGATCGCGGCTGAGGATCTGTGTCTGAGTCCGGTAGAGCAAGCTGAGGTGGGA
GAGCGGACCGACAAGTATCCGCTGCCCGCCTATCTTGACCGGGTTGAAAAAGAGGCGCTGATGGAGGCGCTACAGCAGAC
GAATTTTAATCGAACCGCTGCCGCGAAACTGATCGGACTGACGTTTAGAACCATGCGCTATCGTATGGAGCGACTGGGCA
TCAAGAGCCCGGCGGGGGCGGATGATGCGGATTGA

Protein sequence : 
MNMADKTKREFQSGSVKGAALQQSVLLVDDEPDILELLEMTLLKMGLVVDKAACVQEALAKLAANRYDLCLTDMRMPDGD
GLEVVKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQPSPSADKLLLGNAPAMQK
VRDLIERVARSQAPVYISGESGSGKELAARLIVQSGPRSDQPVIAVNCGAIPENLMESEFFGYKKGAFTGADKDRDGFFQ
AANGGTLFLDEVADLPLTMQVKLLRVIQEKRVRKVGSTTEEPVDVRLISATHKDLAERVKSGQFRQDLYYRLNVIPIQMP
SLRELREDIAQIAQQVLNRLRAGVPTRFSDEALRVLQQYDFPGNVRELENIIERALALCSEGVIAAEDLCLSPVEQAEVG
ERTDKYPLPAYLDRVEKEALMEALQQTNFNRTAAAKLIGLTFRTMRYRMERLGIKSPAGADDAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-91 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-91 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Galf_0370 YP_003846178.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0467 Protein 1e-77 44
Galf_0370 YP_003846178.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0089 Protein 2e-69 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Galf_0370 YP_003846178.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 8e-117 56
Galf_0370 YP_003846178.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG0116 Protein 4e-61 41