Gene Information

Name : COB47_2063 (COB47_2063)
Accession : YP_003841308.1
Strain : Caldicellulosiruptor obsidiansis OB47
Genome accession: NC_014392
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2210335 - 2211012 bp
Length : 678 bp
Strand : -
Note : KEGG: ate:Athe_2297 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATTGAACTTAATGATATCTACAAAATCTACAAGATGGGCGAGAACGAGGTGTATGCTTTAAACGGTATTAACCTAAA
AATCAACCCTCACGAGTTTGTTGCAATAGTAGGACCATCTGGTTCAGGAAAATCAACCCTTATGAACATCATAGGATGTC
TTGACACACCGACATCTGGCACATACATACTGGATGGTCATGAAGTCAGCAGGCTCAATGACAATCAGCTTGCAGAGATT
CGAAACAGCAAGATAGGCTTTGTGTTTCAAAACTTTAACTTAATACCACAGCTCACAGCTCTTGAAAACGTTGAGCTTCC
TTTAATCTACAAAGGTGTTCCAGCCTCTGTGCGTCACAAGCTTGCAAAAGAGGCTTTGGCAAGGGTTGGTTTGGAACATA
GAATGCATTACAGGCCAAGAGAGCTATCTGGCGGTCAGCAGCAGAGAGTTGCAATTGCAAGGGCGCTTGTCACAAGCCCG
CCAATAATCCTGGCTGACGAGCCGACGGGAAATTTGGACTCAAAATCAGGTGCTGAGATTATGCAGATTTTTAAAGATCT
ACATGCTCAAGGAAACACCATTGTCCTAATCACGCACGACAACAACATCGCCATGCAGGCAAGAAGGATTGTGAGGATTC
AGGACGGTCAAATAATAGAGGACAAGGAGGTGAGCTGA

Protein sequence : 
MIELNDIYKIYKMGENEVYALNGINLKINPHEFVAIVGPSGSGKSTLMNIIGCLDTPTSGTYILDGHEVSRLNDNQLAEI
RNSKIGFVFQNFNLIPQLTALENVELPLIYKGVPASVRHKLAKEALARVGLEHRMHYRPRELSGGQQQRVAIARALVTSP
PIILADEPTGNLDSKSGAEIMQIFKDLHAQGNTIVLITHDNNIAMQARRIVRIQDGQIIEDKEVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-37 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
COB47_2063 YP_003841308.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-61 59
COB47_2063 YP_003841308.1 ABC transporter-like protein CP001581.1.gene598.p Protein 7e-42 49
COB47_2063 YP_003841308.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-40 47
COB47_2063 YP_003841308.1 ABC transporter-like protein NC_008702.1.4606598. Protein 9e-49 47