Gene Information

Name : COB47_1448 (COB47_1448)
Accession : YP_003840724.1
Strain : Caldicellulosiruptor obsidiansis OB47
Genome accession: NC_014392
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 1563862 - 1564326 bp
Length : 465 bp
Strand : -
Note : PFAM: protein of unknown function DUF163; KEGG: ate:Athe_1077 protein of unknown function DUF163

DNA sequence :
ATGATAAAAATAATCAGTGTTGGAACAATAAAAGAGAAGTATTTCTTGCAGGCATGTGAAGAGTACAAAAAAAGGCTTTC
GCGGTGGGTAAAAGTAGAAGAAATAGAGATTAAAGAAGAAGATGAAAATAAATATTCTAATATTGAAACTCTTTTAGAAA
AAGAAGCTGATAAGGTTTTAAAATTCATAAAGGAAGATGAATTTATAATCGTATGTGACGTTAATGGTTTTGAGTTTTCC
TCAGAAGAATTTTCTGAGATTCTAAGAAAAAATATATATAGTGGTAAAAATATTACTTTTATAATTGGCAGTTCCAATGG
ACTTTCAAATGAAGTGAAAAGAAAAGCTGATTTACTTATTTCATTTTCAAAACTTACTTTTCCTCATCAGCTTTTTAGAG
TTTTACTTTATGAACAGATTTACAGAGGATTTTCGATTATTTATGGGACAAAGTACCATAAATAA

Protein sequence :
MIKIISVGTIKEKYFLQACEEYKKRLSRWVKVEEIEIKEEDENKYSNIETLLEKEADKVLKFIKEDEFIIVCDVNGFEFS
SEEFSEILRKNIYSGKNITFIIGSSNGLSNEVKRKADLLISFSKLTFPHQLFRVLLYEQIYRGFSIIYGTKYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 8e-17 44
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-19 42
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-19 42
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-19 41
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-19 41
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 5e-16 41
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-19 41
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-19 41
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-19 41
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-19 41
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-19 41
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 5e-19 41
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-19 41
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-19 41
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-19 41
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-19 41
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-19 41