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Name : COB47_1113 (COB47_1113) Accession : YP_003840398.1 Strain : Caldicellulosiruptor obsidiansis OB47 Genome accession: NC_014392 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0749 EC number : - Position : 1232701 - 1235253 bp Length : 2553 bp Strand : + Note : TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: ate:Athe_1441 DNA polymerase I; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class DNA sequence : ATGAAATTAGTTATATTTGATGGTAACAGTATTTTATACAGAGCTTTTTTTGCTCTTCCTGAACTGACAACTTCGAGTAA TATTCCTACAAATGCTATTTATGGGTTTATAAATGTAATATTGAAATATTTAGAGCAAGAGAATCCTGATTATGTTGCAG TTGCATTTGATAAGAAAGGAAGACAGGCACGAAAAAGCGAATATGAAGAATACAAAGCTAACAGAAAACCTATGCCAGAT AATCTTCAAGTACAAATCCCTTATGTTAGGGAGATTCTTTATGCTCTTAATATTCCAATTATTGAGTTTGAAGGTTATGA AGCGGATGATGTAATTGGCTCGCTTGTAAACATGTTCAAAAATACTGATTTAGATATTGTTATTATTACTGGTGATAAGG ATACTCTTCAGTTGTTAGATAAAAACGTAGTTGTGAAGATTGTTTCAACAAAATTTGATAAAACAACAGAAGATTTATAT ACTGCAGAGAATGTAAAAGAAAAATATGGAGTTTGGGCAAATCAAGTACCGGATTATAAAGCGCTTGTTGGAGATCAATC AGATAACATTCCAGGGGTAAAAGGAATTGGGGCAAAGAGTGCTCAAAAACTTTTGGAGGAGTATTCCTCTTTGGAAGAGA TATATCAAAATCTAAATAACATCAAAGGTTCTATACGTGAAAAATTAGAGGCTAGCAAAGACATTGCGTTTTTATCCAAG CGTTTAGCGACAATTGTATGTGATTTACCATTAAATATTAAACTTGAGGATTTAAGAACAAGAGAGTGGAACAAGAAAAG ATTATATGAAATTTTACTCCAATTAGAATTCAAGAGTATAATAAAACGGTTAGGGCTGTCAGAAGAGGTTCAAGTTGAGT TTGTTCAACAGCTAACTAATATTCACGATGTAGAGCAAAAAAAGCTTGAAGGAATATCACAGATAAGATCAAAAGATATC TCATTAATGTTTGTGCCAGAAGAAAAATGTTTTTATTTATACGACCAAGAAAGTAATACTGTGTTTGTAACAGAAGAAAG ACATTTAGTAGAGGAGATTTTAAAAAGTGAATCTGTAAAAATTGTATATGATTTGAAAAATATATTTCATGAACTCTACT TAGAGAACACAGATAATATCAGAAATTGTGAGGATGTAATGATTGCTTCTTATGTTCTTGACAGCACAAGAAGTTCATAT GAATTGGAAACATTGTTTATATCCTACTTAAATACCGACTTAGCAGCTGTGAAAAAGGATAAAAAAGTAACATCGGTAAT ACTTTTGAAACGATTATGGGACGAACTTTCAAGCTTAATTGATTTAAATTCATGCCAGTTTGTGTATACAAATATAGAAC GTCCTCTTATTCCTATTCTATACGAGATGGAAAAAGCAGGATTTAAGGTAGACAGAGATGCACTACTTCAGTATACTAAG GAGATTGAAAGCAAAATATTAAATCTTGAGAAGCAGATATATCAAATTGCAGGTGAGTGGTTTAATATAAATTCACCCAA ACAACTTTCTTACATTTTGTTTGAGAAATTAAAACTTCCTGTAATAAAAAAGACAAAAACAGGATATTCCACTGATGCTG AGGTTTTAGAAGAGCTTTTTGACAAACATGAAATAGTTCCTCTTATTTTGGATTACAGGATGTATACCAAGATACTAACA ACCTATTGTCAAGGATTACTCCAGGCAATAAATCCTTCTTCAGGCAGAGTCCATACAACATTTATCCAAACAGGCACAGC GACAGGAAGACTTGCAAGTAGTGATCCTAATTTACAAAATATACCTGTGAAATACGATGAAGGAAGATTAATAAGAAAGG TTTTTATACCTGAAGAAGGGCATGTCCTGATTGATGCGGATTATTCACAAATTGAACTGAGAATACTTGCTCATATTTCT GAAGATGAGAGACTTATAAATGCCTTCAAAAATAACGTTGACATCCATTCGCAGACAGCAGCTGAGGTTTTTGGTGTAGA TATAGACGATGTTACCCCAGAGATGAGAAGTCAAGCTAAAGCAGTAAATTTTGGTATCGTTTATGGGATTTCTGATTATG GACTTGCAAGGGATATTAAGATTTCCAGGAAAGAAGCTGCAGAGTTTATAAACAGGTATTTTGAACGTTATCCTAAAGTT AAAGAGTATTTAGATAATATTGTCAAATTTGCTCGTGATAACGGATATGTTTTAACCCTATTCAACAGAAGGAGATATGT AAAGGACATAAAATCTGCAAACAGGAATGCAAGAAACTATGCCGAAAGGATTGCAATGAATTCGCCAATTCAGGGCAGCG CTGCTGATATCATGAAATTGGCAATGATTAAAGTGTATCAAAAGCTCAAGGAGAATAATCTTAAATCAAAAATAATTTTG CAGGTACACGATGAGCTTTTAATTGAAGCTCCATACGAAGAAAAGGATATAGTAAAAGAAATAGTAAAAAGAGAAATGGA AAATGCAGTAGCTTTAAAAGTGCCTCTGGTAGTTGAGGTGAAAGAAGGACTGAACTGGTATGAGACAAAATAA Protein sequence : MKLVIFDGNSILYRAFFALPELTTSSNIPTNAIYGFINVILKYLEQENPDYVAVAFDKKGRQARKSEYEEYKANRKPMPD NLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLVNMFKNTDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLY TAENVKEKYGVWANQVPDYKALVGDQSDNIPGVKGIGAKSAQKLLEEYSSLEEIYQNLNNIKGSIREKLEASKDIAFLSK RLATIVCDLPLNIKLEDLRTREWNKKRLYEILLQLEFKSIIKRLGLSEEVQVEFVQQLTNIHDVEQKKLEGISQIRSKDI SLMFVPEEKCFYLYDQESNTVFVTEERHLVEEILKSESVKIVYDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRSSY ELETLFISYLNTDLAAVKKDKKVTSVILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTK EIESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILT TYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHIS EDERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKV KEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIIL QVHDELLIEAPYEEKDIVKEIVKREMENAVALKVPLVVEVKEGLNWYETK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 2e-132 | 42 |
