Gene Information

Name : Acear_0861 (Acear_0861)
Accession : YP_003827460.1
Strain : Acetohalobium arabaticum DSM 5501
Genome accession: NC_014378
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 928911 - 929612 bp
Length : 702 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: tpd:Teth39_0825 two component transcriptional regulator; PFAM: response regulator receiver; tr

DNA sequence :
ATGGGGGAAGATCATATATTAGTAGTAGATGATGAAAAGAATATCCTAGAACTGGTTAAGTATAACCTTATTCAGGAGGG
GTATGAGGTTTCTCTAGCTATTAATGGAGAGAAAGCTTTAAAAAAAGTAGATGATATTGCTCCGGATTTAATTATTCTGG
ATATTATGCTGCCTGGACTTGATGGATTTGAGGTCTGCCACTGTTTACAGGAAATGGAGAAGACTGAAGGAATTCCAATT
ATTTTTTTGAGTGCTAAAAGCGAAGTTGAAGATAAAGTAAAAGGATTGAACTTGGGAGCTACTGATTATTTGACTAAACC
CTTTAGTCCTCGAGAGTTGGCTTCTAGAGTTAAAGCAGTTTCACGGAGGATTAATCAGAATCCTTATCACAAGAAAGAGA
CTTTAAGGTATGGTAAACTAACTATGGACTTAAAGGGATATCGGGTATTAATTAATAAAGAAGAGATTGATCTGACTAAT
AAGGAGTTTAATCTTCTAGCCTATTTAATTGATAAGTTAGGTAAAGTCTGTTCTAGGGATGAACTGTTGGCTAATGTCTG
GGGGTATGAAAATGTAAGTGGAATCAGGACAGTAGATGTACATATCCGTATGCTGCGTAAAAAGTTTACTCAGTATAATA
TAGAAAGCCTCTTAATTAAGACAGTACAGGGAGTAGGTTATAAGCTAGTTAAGAATAATTAA

Protein sequence :
MGEDHILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFEVCHCLQEMEKTEGIPI
IFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRINQNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTN
KEFNLLAYLIDKLGKVCSRDELLANVWGYENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-21 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-21 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 6e-32 46
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 5e-37 45
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 5e-30 44
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 4e-29 43
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 4e-27 42
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family FJ349556.1.orf0.gene Protein 8e-26 42
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family AF130997.1.orf0.gene Protein 8e-21 41
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family DQ212986.1.gene4.p01 Protein 5e-22 41
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 1e-31 41
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 8e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family VFG1389 Protein 8e-27 43
Acear_0861 YP_003827460.1 two component transcriptional regulator, winged helix family VFG0596 Protein 9e-22 42