Gene Information

Name : Acear_0855 (Acear_0855)
Accession : YP_003827454.1
Strain : Acetohalobium arabaticum DSM 5501
Genome accession: NC_014378
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 921128 - 921835 bp
Length : 708 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: chy:CHY_2047 DNA-binding response regulator; PFAM: response regulator receiver; transcriptiona

DNA sequence :
ATGAAGGAAAAGAAGATTTTAGTTGTTGATGATGAAGAAAATATAGTTGAATTAGTTAAATTTAATCTAGAAAAAGAAGG
GTACCAAGTCTTTGTAACTTATGATGGTCAGGCTGCTCTTGATAAATTACAGGAAGAAGATATTGATTTATTGGTTCTGG
ATTTAATGTTGCCTGAAATTGGCGGGCTGGATATCTGTAGACAGATTAGAAATGACGATGAGTTGAGTGATTTACCGATT
ATTATGTTAACGGCAAAAGAGAAGGAAGTAGATAGAATTTTAGGATTAGAATTAGGGGCTGATGATTATGTAACTAAGCC
TTTCAGTCCTCGGGAATTGGTAGCTAGAGTTAAAGCAATCTTAAGAAGGACAGGCTCTTCTGGTCAAAAAACAGATGAAG
ATTGTATCAAGCTGGGTGAGATAGTAATTGATTTAAATAAATATGAGGTACTGCTTGATGATAAACAGGTTAACTTTACT
CCTAAAGAGTTTGAATTATTGATGTTATTGGCTAAAAATGCGGGTAAGGTGCTTACTAGAAATTTTCTTCTTAAAGAGAT
CTGGGGTTATGGCTATAATGGCGATACTCGAACGGTGGATGTTCATATTCGTAGAACAAGACAGAAATTAAATAATAATC
TTGCGGAAGATGTTGAGTATATAGAAACAGTAAGAGGAGTCGGATATCGCTTTAAGGAGTTGGAGTAA

Protein sequence :
MKEKKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGLDICRQIRNDDELSDLPI
IMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRRTGSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFT
PKEFELLMLLAKNAGKVLTRNFLLKEIWGYGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRFKELE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-42 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-42 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 4e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 3e-54 51
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 3e-51 50
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 1e-51 49
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 5e-49 48
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_014475.1.orf0.gen Protein 2e-46 47
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_005054.2598277.p0 Protein 2e-46 47
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 4e-48 45
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 1e-39 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 4e-42 44
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family AE015929.1.gene1106. Protein 8e-35 43
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family AF162694.1.orf4.gene Protein 3e-35 43
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 9e-39 43
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family FJ349556.1.orf0.gene Protein 2e-42 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family DQ212986.1.gene4.p01 Protein 5e-37 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_011595.7057856.p0 Protein 4e-39 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_010400.5986590.p0 Protein 4e-38 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_010410.6002989.p0 Protein 4e-39 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family EU250284.1.orf4.gene Protein 3e-37 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002695.1.916589.p Protein 1e-36 42
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family CP000034.1.gene3834. Protein 8e-30 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family NC_002695.1.915041.p Protein 8e-30 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family CP001918.1.gene3444. Protein 4e-35 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family CP001138.1.gene2239. Protein 9e-36 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family CP000647.1.gene2531. Protein 4e-36 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family BAC0039 Protein 2e-36 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family BAC0596 Protein 9e-36 41
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family CP000034.1.gene2186. Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family VFG1563 Protein 1e-42 43
Acear_0855 YP_003827454.1 two component transcriptional regulator, winged helix family VFG1702 Protein 2e-42 43