Gene Information

Name : Acear_1375 (Acear_1375)
Accession : YP_003827953.1
Strain : Acetohalobium arabaticum DSM 5501
Genome accession: NC_014378
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1461304 - 1462116 bp
Length : 813 bp
Strand : -
Note : COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: hor:Hore_00290 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: B8D037 Integrase catalytic region; PFAM: Integrase core domain

DNA sequence : 
ATGTGTCAGGTTTTAGAGGTGTCCCGCTCTGGATATTATAAATGGTTAAATAGAAAACCATCTCAAAGAGAAAAAATAAA
TAAAAAATTAAAACTTAAAATAGCTGAAATTTACTGGCAGCATAATGGAACATATGGTAGCCCTAGAATTCATAGAGTGC
TGCGAAAAGAGGGTTATACAGTGAACATTAAAAGAGTTGCTAGGTTAATGCGGATAATGGGTTTAAAAGCAATTCAAAAA
AGAAAGTTTAAAAGAACTACCAATTCAAATCATGACTTACCTTTAAAAGAAAATCTCCTAAAAAGGGATTTTGATATAGA
TAAACCAGATAAAGTCTGGGTCTCTGATATTACTTATATATCAACTAAAAAGGGTTGGCTTTACCTGGCAGTTGTAATTG
ATCTCTATTCAAGAAAAGTAGTTGGCTATTCTATGAGTAAAAGAATAAATACAGATTTAATAATGTCAGCAACTAAGATG
GCTATAAGTCGCCGCAACCCTGAAGCAGGACTTATATTCCACTCTGATAGAGGTAGCCAGTATGCAAGCCACAAAGTACA
GAATTTATTTAAACAGCATAGTATTAGATCCTCAATGAGTCGTAAAGGTGACTGTTGGGATAATGCAGTTGCTGAAAGTT
TCTTTGGTACTTTGAAGATTGAGTTAGTTTATCATAAAAAGTATTTAACCAGAAATCAAGCTAGGTTAGATATATTTGAA
TATATTGCTGGTTACTATAATAAAGTTAGGCTACATTCATATTTAGATTACATGAGTCCGAAAGACTACGAGAAAGAGAG
AAAAATGGCTTAA

Protein sequence : 
MCQVLEVSRSGYYKWLNRKPSQREKINKKLKLKIAEIYWQHNGTYGSPRIHRVLRKEGYTVNIKRVARLMRIMGLKAIQK
RKFKRTTNSNHDLPLKENLLKRDFDIDKPDKVWVSDITYISTKKGWLYLAVVIDLYSRKVVGYSMSKRINTDLIMSATKM
AISRRNPEAGLIFHSDRGSQYASHKVQNLFKQHSIRSSMSRKGDCWDNAVAESFFGTLKIELVYHKKYLTRNQARLDIFE
YIAGYYNKVRLHSYLDYMSPKDYEKERKMA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-53 46
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-53 46
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-53 46
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-53 46
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-53 46
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-53 46
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-53 46
unnamed AAF09022.1 unknown Not tested SHI-O Protein 9e-53 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 5e-53 45
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 5e-50 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 5e-50 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 5e-50 44
unnamed AAC31485.1 L0006 Not tested LEE Protein 7e-37 43
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 9e-37 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-48 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-48 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-47 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 3e-37 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 4e-37 42
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 6e-45 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-38 41
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acear_1375 YP_003827953.1 integrase catalytic subunit VFG1706 Protein 8e-54 46
Acear_1375 YP_003827953.1 integrase catalytic subunit VFG0785 Protein 2e-37 42
Acear_1375 YP_003827953.1 integrase catalytic subunit VFG1631 Protein 4e-45 42