Gene Information

Name : Toce_2256 (Toce_2256)
Accession : YP_003826588.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Unknown
Product : single-strand binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 2256390 - 2256821 bp
Length : 432 bp
Strand : -
Note : COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: nth:Nther_2915 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM:

DNA sequence :
TTGAACAAGGTTATTCTAATAGGGAGGTTGACGAAAGACCCCGAACTGCGGTTCACCCCTGCTAACGGAGTGGCGGTGGC
CACCTTCACCCTGGCGGTGGATAGGCCCTTTATAAACCAAAAGGGTGAGCGCGAAGCCGACTTTATACCCGTAGTGGTAT
GGAGGAAGCTGGCGGAAACCTGTGCCAACAACCTCAAGAAGGGCCGGCTGGTGGGCGTATCCGGGAGGCTTCAGGTGAGG
TCCTACGATACGCCCGGCGGGCAGCGGCGCTGGGTTACCGAAGTGGTCGCCGATGAAGTGCAGTTTTTAGACAGGCCCAG
ATCGGCCGAACCGAATTCTGGTTTCAGTGGGAACAACGAGGGAATCGAAGATATAGATTTTGATTTCGATTTCGATGAAA
ACGTATCCGAAGGCGACGATGTACCTTTTTGA

Protein sequence :
MNKVILIGRLTKDPELRFTPANGVAVATFTLAVDRPFINQKGEREADFIPVVVWRKLAETCANNLKKGRLVGVSGRLQVR
SYDTPGGQRRWVTEVVADEVQFLDRPRSAEPNSGFSGNNEGIEDIDFDFDFDENVSEGDDVPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAOV_0290 YP_005735807.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa1 Protein 5e-28 68
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 8e-28 67
SAV0864 NP_371388.1 ssDNA-binding protein Not tested ¥ÕSa1 Protein 5e-28 66
SH1792 YP_253707.1 single strand DNA binding protein Not tested ¥ÕSh1 Protein 7e-28 65
SAOV_1956c YP_005737400.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa3 Protein 5e-26 63
MW1921 NP_646738.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 7e-28 58
SAUSA300_1958 YP_494609.1 single-strand binding protein Not tested ¥ÕSa3 Protein 3e-28 57
SAUSA300_1958 YP_494609.1 single-strand binding protein Not tested ¥ÕSa3 Protein 3e-28 57
SAKOR_01963 YP_008492151.1 Single-strand DNA binding protein Not tested ¥ÕSa3 Protein 6e-28 56
SAV1983 NP_372507.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 4e-28 56
SA1792 NP_375091.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 4e-28 56
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 8e-26 55
ef0030 AAM75236.1 EF0030 Not tested Not named Protein 9e-16 46
ssb-3 NP_814291.1 single-strand binding protein Not tested Not named Protein 1e-15 46
EFAU085_00699 YP_008394223.1 single-strand binding protein Not tested Not named Protein 1e-15 42