Gene Information

Name : Toce_2221 (Toce_2221)
Accession : YP_003826556.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2223285 - 2223764 bp
Length : 480 bp
Strand : -
Note : COGs: COG1576 conserved hypothetical protein; InterPro IPR003742:IPR016051; KEGG: chy:CHY_0058 hypothetical protein; PFAM: protein of unknown function DUF163; SPTR: Ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase;

DNA sequence :
ATGAACATCACAATAATAGCTGTAGGAAAAATTAAAGAAAGCTATTTAAGGGAAGGCATAAAAGAATATGAAAAAAGGCT
CAAACCTTACTGCACCCTCCGGATAATAGAAGTAGACGAAGAAAGGGCGCCGGACAATCCATCACCGGCGCAAAAAGAAA
GGGTGCTGAAAAGGGAAGGGGAGCTAATTTTGGCTAAAATCCCCCGGCAAGGCTTTAAAATCGCCCTTTGCATCGAGGGA
GAGAGATTTTCGTCGGAAGGGATGGCAGAGAAAGTTAAAGACCTTGTCCTTTACGGTATTTCGGATATAACCTTCGTAAT
AGGCGGCTCTTTAGGTCTTTCTGATGAGGTTAAGAAAACCTGCGACATGAGACTTTCTTTTTCCGATTTTACCCTTCCTC
ACCAACTCATGCGCCTTCTGCTTTTGGAGCAGATTTATCGCTGGTTCAAAATAATCCGGGGGGAAACCTACCACAAATGA

Protein sequence :
MNITIIAVGKIKESYLREGIKEYEKRLKPYCTLRIIEVDEERAPDNPSPAQKERVLKREGELILAKIPRQGFKIALCIEG
ERFSSEGMAEKVKDLVLYGISDITFVIGGSLGLSDEVKKTCDMRLSFSDFTLPHQLMRLLLLEQIYRWFKIIRGETYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 5e-34 53
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 7e-33 53
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 5e-34 53
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 5e-34 53
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 5e-34 53
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 5e-34 53
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 5e-34 53
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-33 53
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 5e-34 53
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-34 53
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 5e-34 53
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-34 53
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 5e-34 53
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 5e-34 53
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-33 52
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-33 52
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-33 51
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 5e-21 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-30 50