Gene Information

Name : Toce_2206 (Toce_2206)
Accession : YP_003826541.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Unknown
Product : pyridoxal phosphate synthase yaaD subunit
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 2209722 - 2210591 bp
Length : 870 bp
Strand : -
Note : COGs: COG0214 Pyridoxine biosynthesis enzyme; InterPro IPR001852; KEGG: cbh:CLC_2676 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxine biosynthesis protein; TIGRFAM: pyridoxine biosynthesis protein; PFAM: SOR/SNZ f

DNA sequence : 
ATGTCACGGGAAAAAAACAACAAAAACCTTGCGGAAATGCTAAAGGGCGGGGTTATAATGGACGTCACCACGCCCGAGCA
GGCCAGAATTGCTGAAGAAGCCGGAGCCGTAGCAGTCATGGCTCTGGAGAGGGTGCCGGCGGATATACGGAAACAGGGCG
GTGTGGCGCGCATGTCCGACCCCAAGGTGATAAAAGCCATAAAGCAGGCGGTGAGCATTCCGGTCATGGCCAAGTGCCGG
ATCGGGCATTTTGTGGAGGCCCAGATCCTGGAGGCGCTGGGAGTGGACTTCATCGATGAGAGTGAGGTGTTGACGCCCGC
CGACGAGTTCTGCCATATAGACAAGAAAAAATTCAAAGTGCCTTTCGTCTGCGGTGCCAGAAGTCTGGGAGAAGCCCTGC
GCCGTATAGCGGAAGGAGCATCCATGATTAGGACCAAGGGCGAGGCGGGCACCGGCAACGTGGTGGAGGCGGTGCGCCAC
ATACGGACGATCATGGGTGAGATAAGGAAGCTCCAGAACATGCCGCGGGAAGAACTGATTACTGCCGCCAAGGAGATGGG
AGCACCTTACGAACTGGTGCTCTACGTGGCCGAGCACGGCCGGCTGCCCGTTGTAAATTTTGCCGCGGGAGGAGTGGCCA
CGCCCGCCGATGCGGCCCTGCTGATGCAGCTCGGGTGCGACGGAGTTTTCGTGGGGTCGGGGATTTTCAAGTCCGAAAAT
CCGGCCAAAAGGGCTAAGGCCATAGTAAAGGCGGTGGCCCACTACGACGACCCCGAAGTGCTGGCCGAAGTTTCCGAGGA
CCTGGGGGAAGCCATGCCCGGCCTGGAGATAGAAAGGCTCACGGATCGCTATGCCGAGCGCGGGTGGTAG

Protein sequence : 
MSREKNNKNLAEMLKGGVIMDVTTPEQARIAEEAGAVAVMALERVPADIRKQGGVARMSDPKVIKAIKQAVSIPVMAKCR
IGHFVEAQILEALGVDFIDESEVLTPADEFCHIDKKKFKVPFVCGARSLGEALRRIAEGASMIRTKGEAGTGNVVEAVRH
IRTIMGEIRKLQNMPREELITAAKEMGAPYELVLYVAEHGRLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSEN
PAKRAKAIVKAVAHYDDPEVLAEVSEDLGEAMPGLEIERLTDRYAERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 1e-83 72
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-83 72
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-83 71