Gene Information

Name : Toce_2171 (Toce_2171)
Accession : YP_003826507.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2173841 - 2174521 bp
Length : 681 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR017871:IPR003439:IPR017911; KEGG: ate:Athe_2297 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related;

DNA sequence :

GTGATCGAGTTGATAGGCGTATCCAAGGTTTACGGAAAGGGAAAGAACCAGGTGCCCGTCCTCGACGACATAAACCTCAA
AGTGGACGAAGGCGAATTCGTAGCTATCCTGGGACCTTCCGGGTCCGGAAAGACGACGCTGATGAACATCCTGGGCCTCA
TCGATACCCCCACCTCGGGCAGCTACATCTTCGAGGGCAAACCCGTCAGCGAATTGAAGGATCGGGAACTGGCGAAGATA
AGGAACAGGAAAATAGGCTTTGTATTCCAGAGCTTCAACCTCATCCCGGACCTGGACGCCCTGGAAAACGTCGAGCTGCC
CCTCATATACGCCGGCGTAAAGCCCACCGAGAGGCAAAAGAGAGCCGCCGAACTTCTTGACCTCGTCGGCCTGTCGGACC
GTACCCGCCACAGGCCTGCTGAAATGTCCGGCGGCCAGCAGCAGAGGGTGGCCATCGCCCGGGCTCTGGCCGCGGACCCG
CCTCTCATCCTGGCCGATGAACCTACGGGCAACCTGGACTCCAGATCCGGCGCCGAAGTAATGAACATCCTTGAATCGCT
GAACGTGTCCGGAAAAACCGTAATACTCATAACCCACGACAGGGAAATCGCCGCCAGGGCCAAGAGAAAAATCGAAATAA
GGGACGGAAAAATAGTCCGCGACGAAAGGGTGAAGGATTAA

Protein sequence :

MIELIGVSKVYGKGKNQVPVLDDINLKVDEGEFVAILGPSGSGKTTLMNILGLIDTPTSGSYIFEGKPVSELKDRELAKI
RNRKIGFVFQSFNLIPDLDALENVELPLIYAGVKPTERQKRAAELLDLVGLSDRTRHRPAEMSGGQQQRVAIARALAADP
PLILADEPTGNLDSRSGAEVMNILESLNVSGKTVILITHDREIAARAKRKIEIRDGKIVRDERVKD

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
cur_1502	YP_001800896.1	cell division ATP-binding protein FtsE	Not tested	Not named	Protein	7e-30	43
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-28	43
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	4e-29	42
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	4e-29	42
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	4e-29	42

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Toce_2171	YP_003826507.1	ABC transporter	NC_012469.1.7686878.	Protein	2e-55	58
Toce_2171	YP_003826507.1	ABC transporter	NC_008702.1.4606598.	Protein	3e-45	52
Toce_2171	YP_003826507.1	ABC transporter	CP001581.1.gene798.p	Protein	4e-37	46
Toce_2171	YP_003826507.1	ABC transporter	CP001581.1.gene598.p	Protein	8e-33	45
Toce_2171	YP_003826507.1	ABC transporter	NC_012469.1.7686946.	Protein	4e-28	44