Gene Information

Name : Toce_2123 (Toce_2123)
Accession : YP_003826460.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2127215 - 2129659 bp
Length : 2445 bp
Strand : -
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR018368:IPR001270:IPR004176:IPR 003959:IPR001943:IPR013093:IPR019489; KEGG: tte:TTE2327 ATPase with chaperone activity, ATP-binding subunit; PFAM: ATPase AAA; Clp domain

DNA sequence :
ATGAACGGCAAATTTACGGAAAGAGCGCAGAGGGTTATCGCCTATGCCCAGGAAGAAGCGAGGCGCTTGAACCACAATGT
GGTGGGAACCGAACACCTGCTTTTGGGGTTGATAAGGGAAGGCGAAGGAGTAGCCGCAAGGGCTCTCCAGAATCTAGGGG
TTGAGCTCTCTAAAGTCCGGGAACAGGTTCAAAGGCTCATAGGAGTGGGTCCCTTTGTCGTCCAGGGGCCGATCGGTTAC
ACTCCCAGGGCTAAGAGGGTGCTGGAACTGGCCCTCGATGAATCCCGCAGGTTGAAGCACAACTACGTGGGCACCGAACA
CATACTCCTCGGCCTCATCAGGGAGGGCGAAGGTGTAGCCGCTCAGGTGCTGGCGAACCTGGGGGTGAGCCTGGAAAGAG
CCCGGACCGAGGTGCTGTCCCTGCTGGGTTCCGACGTAAAGGGGCACCCCGGCTTCCGGAAGTCGGGCAACACGCCGACC
CTGAACCAGTTCAGCAGGGATCTGACCGAACTTGCCGCCGAGGGCAAGCTGGACCCGGTTATAGGCCGGCAGAAAGAAAT
AGAGCGGGTAATACAGGTGCTTACCAGGCGGACCAAGAACAACCCGTGCCTTATCGGTGAGCCCGGTGTAGGCAAAACCG
CCATAGTGGAGGGGCTAGCCCAGAGGATAGTCGAGGGAGAGGTGCCCGAAATTCTGAAAGATAAGCGGATCGTGAGCCTT
GATCTGGCTTCCCTCGTGGCGGGCACCAAGTTCAGGGGAGAGTTTGAAGAAAGGCTCAAAAAGGTGATCAACGAGGTTAA
ACAGGCGGGCAATGTCATCCTCTTCATAGATGAGATGCACACCATAATCGGAGCCGGAGCCGCCGAGGGGGCCATAGACG
CTTCGAATATATTAAAGCCCTCCCTCGCCAGGGGCGAACTGCAGACGATCGGTGCGACCACCCTGGACGAGTACAGGAAG
CACGTAGAAAAGGACCCGGCGCTGGAAAGGCGATTCCAGCCCATCATAGTCGAAGAACCTTCGGTGGAAGACACCATTAA
GATACTGGAAGGCTTAAGGGACAAGTACGAAGCCCATCACAGGGTGAAAATTTCCGACGAAGCCTTGGTAGCCGCGGCCA
AACTTTCGGCCCGATATATCACCGACAGATACCTGCCTGACAAGGCTGTAGACCTTATAGACGAGGCTGCTTCCAGGGTG
AGGCTGCAGAGCCTGACAGCGCCTCCGGAGCTCAAGGAACTGGAAGACGAACTGGATGCCGTGCGCAAGGAGAAGGACGC
CGCCATCAGGGCCCAGGAATTCGAAAAGGCAGCAAGGCTCCGGGATAAGGAACATGAGATCAAAGCCAAGGTTGACAGCC
TGAAAACCCGCTGGCAGCAGGAGAAAAAGCTCGAAAATGCTACGGTGACTGCGGCGGATATAGCAGGGATAGTTTCCAAC
TGGACCGGCATACCCGTGGAGCGCATGACCGAAGAGGAGTCCGAGCGTCTCCTCAGGATGGAGGAAATCCTACACCAGAG
GGTGATAGGCCAGGATGAGGCTGTAGAGGCCGTGGCAAGGGCTATCCGCAGGGCCCGCGCAGGCCTTAAGGACCCCAGGC
GGCCGGTAGGCTCCTTTATATTCCTCGGCCCCACCGGTGTCGGCAAAACCGAGCTGGCCAGGGCCCTGGCTGAAGCCATG
TTCGGCGATGAGGACGCCATGATAAGGCTGGACATGTCCGAATACATGGAGAAATTCGCCGTTTCCCGCATGATAGGTGC
TCCTCCGGGATACGTGGGATACGAGGAGGGCGGTGAACTTACCGAAAAGGTGCGCAGGAAACCTTATTCGGTAATTCTGT
TTGACGAGATCGAGAAGGCTCATCCCGACGTTTTCAACATACTGCTGCAGATTCTTGAGGACGGCAGGCTTACCGACGCC
CAGGGCAGGACCGTGGACTTCAAAAACACCGTTATAATTATGACCTCCAACGTGGGTGCAAACCTCATCCAGCGGGCCAG
GACCCTAGGTTTTACTCCCAGGGACGAAGAGACCAAAAATTACTCCGAGATGAAGGACAGGGTGCTGGAAGAACTGCGGC
GCACCTTCAGGCCCGAGTTCATCAACAGGGTAGACGAGATAATAGTTTTCCACCCCCTGAACGAAGAGCACATGAAAAAG
ATCGTGGATCTGATGCTGAAGCAGGTCAACGAAAGGCTGAAGGAGAACGACATAAGTATCGAGGTATCCGACAGGGCCAA
GGAATGGCTAGTGAAGAAGGGATTCGATCCCATGTACGGTGCAAGGCCTTTAAGGAGGGTCATCCAGAAAGAGGTAGAAG
ACAATCTTTCCGAAGAAATTCTAAAGGGCAATGTATCTCAAGGCGATACGGTACTGGTGGATGTCCAGGATGACAGGTTG
ACCTTCCATAAGAAGGAAGTGTCCGTGGCAAATACCGGTGAATAA

Protein sequence :
MNGKFTERAQRVIAYAQEEARRLNHNVVGTEHLLLGLIREGEGVAARALQNLGVELSKVREQVQRLIGVGPFVVQGPIGY
TPRAKRVLELALDESRRLKHNYVGTEHILLGLIREGEGVAAQVLANLGVSLERARTEVLSLLGSDVKGHPGFRKSGNTPT
LNQFSRDLTELAAEGKLDPVIGRQKEIERVIQVLTRRTKNNPCLIGEPGVGKTAIVEGLAQRIVEGEVPEILKDKRIVSL
DLASLVAGTKFRGEFEERLKKVINEVKQAGNVILFIDEMHTIIGAGAAEGAIDASNILKPSLARGELQTIGATTLDEYRK
HVEKDPALERRFQPIIVEEPSVEDTIKILEGLRDKYEAHHRVKISDEALVAAAKLSARYITDRYLPDKAVDLIDEAASRV
RLQSLTAPPELKELEDELDAVRKEKDAAIRAQEFEKAARLRDKEHEIKAKVDSLKTRWQQEKKLENATVTAADIAGIVSN
WTGIPVERMTEEESERLLRMEEILHQRVIGQDEAVEAVARAIRRARAGLKDPRRPVGSFIFLGPTGVGKTELARALAEAM
FGDEDAMIRLDMSEYMEKFAVSRMIGAPPGYVGYEEGGELTEKVRRKPYSVILFDEIEKAHPDVFNILLQILEDGRLTDA
QGRTVDFKNTVIIMTSNVGANLIQRARTLGFTPRDEETKNYSEMKDRVLEELRRTFRPEFINRVDEIIVFHPLNEEHMKK
IVDLMLKQVNERLKENDISIEVSDRAKEWLVKKGFDPMYGARPLRRVIQKEVEDNLSEEILKGNVSQGDTVLVDVQDDRL
TFHKKEVSVANTGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 60
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-87 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Toce_2123 YP_003826460.1 ATPase AAA VFG0079 Protein 0.0 65
Toce_2123 YP_003826460.1 ATPase AAA VFG0080 Protein 4e-139 52