Gene Information

Name : Toce_1954 (Toce_1954)
Accession : YP_003826302.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Unknown
Product : IstB transposition helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1969176 - 1969946 bp
Length : 771 bp
Strand : +
Note : COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR001270:IPR002611; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: ISChy4, transposition helper protein; PFAM: Ist

DNA sequence : 
ATGATAGACCTTGAAAAAGCTCGGTCCCACCTTGAAGAACTGGGGCTTTTAAACGCAGCATCTTTCCTTGACGCCCTCCT
TGAAAGAGCTCAACGCCAAAATAGCACGTATCTTGATTTCTTAAATAACCTGCTCGAGGCTGAACTTGCTGAAAGGCAAA
GGCGGAATATCGAGGTAAGGTCAAAACTTGCCCGGCTTCCATACCGCAAGACTCTAACCGAATTTGACTTTGCCTTCCAG
CCCAGCATCGATGAAAAACTGATAAAAGAGCTTGCCACAATGGCCTTTGTCCACCGGGTAGAAAACGTAATATTTCTTGG
CCCGCCTGGAGTAGGGAAGACGCACCTTGCCGTGGCTCTTGCTATAGAAGCCCTATCTTGTGGTATATCAGTCTACTTCA
CGAGTCTTTCTAGGCTCATTGAGGACCTCAAAAAGGCATATAAAGAAAGCCGGTTAGAAAGGCGAATGAGGATCTACACT
AGGCCCAAGCTCCTTGTAATCGATGAAGTAGGCTATCTTCCATTAGATGGCCTTGGCTCGAACCTCTTTTTCCAGCTAAT
AAGTGCCCGATATGAAAAGGGGAGCATAATACTTACCAGCAACAAAGGCTTTGGAGAATGGGGGGAGCTCATGGGAGACC
CTGTACTTGCTACTGCAGTGTTGGATAGACTATTACACCATGCCCACATAATCAACATAAGGGGCAACAGCTACCGCCTA
AAGGACAGGCTAAAGACCGGGTTGTATGGTAACCAACATAATAATGCTTAA

Protein sequence : 
MIDLEKARSHLEELGLLNAASFLDALLERAQRQNSTYLDFLNNLLEAELAERQRRNIEVRSKLARLPYRKTLTEFDFAFQ
PSIDEKLIKELATMAFVHRVENVIFLGPPGVGKTHLAVALAIEALSCGISVYFTSLSRLIEDLKKAYKESRLERRMRIYT
RPKLLVIDEVGYLPLDGLGSNLFFQLISARYEKGSIILTSNKGFGEWGELMGDPVLATAVLDRLLHHAHIINIRGNSYRL
KDRLKTGLYGNQHNNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 4e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Toce_1954 YP_003826302.1 IstB transposition helper protein VFG1460 Protein 2e-38 45