|
Name : Toce_1818 (Toce_1818) Accession : YP_003826172.1 Strain : Thermosediminibacter oceani DSM 16646 Genome accession: NC_014377 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1823360 - 1823827 bp Length : 468 bp Strand : - Note : COGs: COG0691 tmRNA-binding protein; InterPro IPR000037:IPR020081; KEGG: tte:TTE0985 SsrA-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein DNA sequence : ATGCGGGAAAAAAAATCCCGGGACCTGGTTACCAACCGGAAAGCCCGCCACGACTACCACATAATAGAGACTTATGAGGC GGGTATAGTGCTGGCCGGCACCGAGGTAAAGTCCTTAAGGGAAGGTAAGGCCAATTTAAAGGACAGTTTCGCCCGGGTTG AAAAAGGAGAACTGTACCTTTACAATATGCACATAAGCCCTTACGAGAAGGGAAATATATTCAACAAGGACCCGCTGAGG CCCCGAAAGCTGCTCATGCACCGCCGGGAGATAGACCGGCTCTACGGACTGGTGAAGGAGAAAGGTGTTACCCTGGTGCC CCTGAGGGTGTATTTGAACGAAAGGGGCCTGGTAAAGGTTGAGCTGGCAGTGGCCAAGGGTAAGACCCTATACGATAAAA GGGAGGATATCAAGCGCAGGGACGCCGAGCGGGAAATGGAAAAGGCCTTCAAGGAGTACAATAGATGA Protein sequence : MREKKSRDLVTNRKARHDYHIIETYEAGIVLAGTEVKSLREGKANLKDSFARVEKGELYLYNMHISPYEKGNIFNKDPLR PRKLLMHRREIDRLYGLVKEKGVTLVPLRVYLNERGLVKVELAVAKGKTLYDKREDIKRRDAEREMEKAFKEYNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-35 | 58 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-34 | 57 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-25 | 43 |
