Gene Information

Name : Toce_1087 (Toce_1087)
Accession : YP_003825471.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1066888 - 1067784 bp
Length : 897 bp
Strand : +
Note : COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104:IPR011931:IPR011932; KEGG: bbe:BBR47_34900 probable tyrosine recombinase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Tyrosine recombinase Xe

DNA sequence : 
GTGGAAAACCATGCGATTGACAGTTTTCTAACTTATATTAGTGCAGCGAAAAACCAATCGCCGAACACCTTAAAAGCCTA
TGCTAACGACTTGGGGCAGTTTATCGAATATTTGGAACAAAATAAAATATCTAAAACGAAGACCCTAAACGACATCACCC
ATCTAGACATTCGCGGATTTTTAGCCTATCTTAAGGAAAGCGGCGCATCCAAAAAAACTATCGCGCGTAAGCTCTCTGCC
ATAAGGAGCTTTTTTAGGTACCTTAGCACAGAAGGCCTGGTTTCAGAGGACCCGACAAAGATGGTTCAAGGGATGAAATT
ACCCAAAAAATTGCCTCTCTTTTTGTATCCGGCTGAGATTGAGGCTTTGCTTTCGGCGCCCGGGCAGGATGTGCTGGGCA
TCAGGGATAGAGCAATAATGGAACTTTTGTACGCTACCGGAATGAGGGTAAGTGAACTTGTTTCACTAAAACTCAAAGAT
GTCAATCTGGGTGCGAACTTCATTATAGTGTTCGGTAAAGGTTCGAAGGAGAGGGTGGTGTTTTTCGGGTCAAAAGCTGC
TGAAAGTCTTGAAGAGTACTTGAGAAAAAGCAGGCCGTACCTTGTAAAAAATTTAACGTGCGATTATTTGTTTTTAAACA
AGAATGGGACCAGGTTGACCGATAGAAGCGTAAGAAGGATAATAGATAAGTACGTTAAATTATTGTCGTTGAACGCCAAA
ATCAGTCCTCACACTCTAAGACATACTTTTGCAACCCATATGCTGAATAACGGAGCGGATTTAAAGACTGTTCAGGAGTT
GCTGGGCCATGTGAGCTTGTCTACGACGCAGATCTACACTCATGTTACAAAAGAAAGGCTGAAAGAGGTCTATGACAAAG
CCTTTCCTCACTCGTGA

Protein sequence : 
MENHAIDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKTKTLNDITHLDIRGFLAYLKESGASKKTIARKLSA
IRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALLSAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKD
VNLGANFIIVFGKGSKERVVFFGSKAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLNAK
ISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKERLKEVYDKAFPHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 5e-45 43
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 5e-45 43