Gene Information

Name : Closa_3260 (Closa_3260)
Accession : YP_003823412.1
Strain : Clostridium saccharolyticum WM1
Genome accession: NC_014376
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 3505478 - 3505957 bp
Length : 480 bp
Strand : -
Note : PFAM: protein of unknown function DUF163; KEGG: eel:EUBELI_01221 hypothetical protein

DNA sequence :
ATGAAGATCACTCTGGTAACGGTAGGAAAAATAAAGGAAAAGTTTTATACAGATGCCATCGGGGAATACAGCAAAAGACT
GAGCCGTTACTGCAAGCTGGAGATTATCCAGGTGCCCGATGAAAAGACGCCGGACTCAGCCGGTGAAGCAGTGGAAAGGC
AGATCAGGGAGAAGGAAGGAGAAAGGATCCTTTCTTCCATTAAGGATGGGGCCTATATGATCGCCTTGGCCATTGATGGG
GAAAACCTAGATTCGGTTCAGCTTTCAGAGAAAATAAACGGATTGGGAATCGGAGGGGTGAGCCAGATCGTGTTTGTCAT
CGGCGGGTCTTTGGGGCTTTCTGATGCAGTTTTAAAGAGAGCGGATTACAGGCTGAGCTTTTCTAAAATGACCTTTCCTC
ATCAGCTGATGCGGGTGATTTTATTGGAGCAGGTATACCGCAGCTACCGCATTATAAATGGAGAGCCATACCATAAGTGA

Protein sequence :
MKITLVTVGKIKEKFYTDAIGEYSKRLSRYCKLEIIQVPDEKTPDSAGEAVERQIREKEGERILSSIKDGAYMIALAIDG
ENLDSVQLSEKINGLGIGGVSQIVFVIGGSLGLSDAVLKRADYRLSFSKMTFPHQLMRVILLEQVYRSYRIINGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-43 56
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-43 55
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-43 55
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-43 55
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-43 55
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-43 55
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-43 55
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-43 55
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-43 55
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-43 55
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-43 55
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-43 55
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-43 55
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-43 55
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 6e-40 53
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-42 53
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-41 52
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-41 52