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Name : HMPREF0659_A7238 (HMPREF0659_A7238) Accession : YP_003815260.1 Strain : Genome accession: NC_014371 Putative virulence/resistance : Unknown Product : DNA primase small subunit Function : - COG functional category : S : Function unknown COG ID : COG4951 EC number : - Position : 1100231 - 1103125 bp Length : 2895 bp Strand : - Note : identified by match to protein family HMM PF00270; match to protein family HMM PF01896; match to protein family HMM PF04851 DNA sequence : ATGGATGATTTACTGACAAGATATAATAAACTTCTTAGGCAATATGAGGTTTTGCACAAAGAGAATGAGGTTCTGATATC ACTTCTAAAAATCCATGGTATTGAATATGAAACAAGGATGAAAGAAGATATGAATAAGCCTATATATTCTTTGGTTTCAG TTCCAACTATTACTCTTTCGATTGATGAGCGCATAAGACTTTTCCAATCCTTATTTAAAGGGAGGGAAGATGTCTTTGCA CGGAGATGGTTTAGTAAGACAACTGGTAAATCTGGATATCAACCTGTTTGTATTAATGAGTGGAAACAAGGTATCTGTGA TAAGAAGAGGTATAGGTGTGCAATATGTCCAAATAGAAACTTTGCACCACTAACGTCTCAAGATATGTATCGCCATTTAG AAGGGAAAGATGAGTATTGCTGTGATGTTGTGGGACTCTATGCTATCATGCAAGATAATAACTGTGCTTTCCTTTGTGCC GATTTTGATGACAAGAACTGTAAGTATGGTTATAAAGAAGATGTACTTGCCTATGTGGGTGTGTGCAGAGAATGGCTGAT TCCCTATGCCATAGAGCGCTCGAGATCGGGGAATGGTGCCCACGTGTGGATTTTCTTTGAAGCGCCTCTACCAGCATCTA AGGCGAGGAGATTAGGAAATGCTATACTAACAGAAGCTATGACGCGTAATGGACAGATGTCGTTCAACTCCTATGACCGT TTCTTTCCCAATCAAGATTATTTACCAGAAGGAGGCTTTGGCAACCTCGTTGCACTCCCACTACAAGGTCAGGCACGCAG GAAAGAGAACAGTGTGTTTGTTGACAATGATTTCCTTGTATATAAGGATCAATGGGCATTTCTATATAATCTCAAGAAAA TACAAGAATCTACTATCGACCAACTACTACGCCTACATTATCAAGAAGAACTTGGAAAACTGTCTATGTCGAGCGAAAGC AAGCCATGGGTTACTCCTTTGCCGCAAAATATTACACAAGAAGACTTCCATGCTAAGGTTGAGATAATCAAAGCAGACAA ACTATACATCCCATTGAAGGCTGTTTCTGCAAAGGTACTAAACCATCTGAAAAGAATTGCAGCCTTCAAGAACCCTGAAT TTTACAGTAAGCAAGCACTCCGCCTTTCTACATATGCCATTCCACGCATAATCTCATGTTTTGATATTACTAACGAATAC CTTGCTATGCCACGTGGTTGTGAGGATGCTACTCGATCATTCCTTAACGACAATGCTGTAACATACACTATTACTGATAA AACAAATCATGGCAATAAGATTTCAGTTTCTTTTCAAGGGGAAGAAAGAGAGGAACAGTTGGAAGCCATCAATGCTCTTT TACCATATACGAATGGCATCCTACATGCCACTACCGCTTTTGGGAAAACCGTTACTGCAGCGGCTATCATCGCTCGTAAA AAAGTAAATACACTCATCCTTGTTCATTCGAAAGCATTACTTAAACAATGGCATGACCGCTTAACAGAGTTTCTTAATAT AGACTATCCAAAACATGAAGAAAAGAATAAACGTGGTAGACGTAAGGTGTTTTCTCCTTTAGGTTGCTTTGATTCATCAG GGAATACACTTCACGGTATTATTGACATAGCTCTTATACAGTCATGTTTGGATGAAGATGGTGTAAAACCATTTGTACAG GACTACGGAATGGTAATTGTTGACGAATGTCATCATGTGTCTTCTATAACCTTTGAACAAGTATTGATGTCTATAAAAGC TCACACCATATATGGGTTAACAGCTACCCCCATTCGTAAAGACGGTCATCAGCCAATCATCTTCATGCAATGTGGTCCAA TACGATTTTCTACTGATGTTAAAAGTCAGATAGCTAAGCAATCCTTCGATAGGTTTCTTATTCCAAGATTTACATCATAT AACTCTATTTTAGAGGACAGACTATCAATTGCAACCTTATATAAATATCTATCCGAAGATGAGATACGCAACAATCTCAT TGTAGAAGATATTTGCAAAGCAGTTAATACAGGAAGAACACCGATCATTCTGACTAATAGAACTGCCCATGTGTCTGTAT TAGCAGAGAAGTTGAAAGCTACCATCAAAAATGTTATCTCATTGACAGGGGCAGGTACGACAAGAGAAAAGCGAGAGGCA ATGCAACGGCTACAAACTATTCCTGACAGCGAACAATTAGTTATTGTCGCAACGGGAAAGTATATTGGCGAAGGCTTTGA TTATCCGCGTCTTGACACCCTATTCCTTGCACTTCCAATCTCATGGAAAGGTCTTTTAACTCAGTATGCAGGTCGGCTTC ATCGGGAATATGAGGGAAAGAAAGATGTACGTATCTATGACTATATCGATATCCATGAGCCAATTTGCGATAGTATGTAT AGAAAACGACTCAAAGGCTATGCTGCAATAGGATACAAAACAATCAATACAGCCCAACCAACATTGTTTGATCATATAAA CGACATATCGTCCTCCATAGCTGAGAATCAGATATTTAATGGTTCAACTTTCTACCGCCCCTATACTTCAGATTTGACAA AGGCTAAGCGTTCCATTGTGATATCTTCACCAAAACTGTATAGAACGGAGCAAAATCCCTTAGTCACTTTGTTGAAAGAA CTTGCTCAGCAGGGAATTGAAATTCTTATTACAACAGTTGCAGAGAACGAACAAACAGCATTCATCCAATCAAAGGGGCT ATCTGTAAAAGTGAAACCAAAGCTATCATTATATACTACCATCATTGATAAAGAAGTTGTTTGGTATGGTTCAATAAACA CGCTTGGTTATGCTTCAAAGGATGATAACATGATAAAGGTGACTGATATTTATCTTGCTAATGAATTGATAAAGATGATA CATAAACATAGTTAA Protein sequence : MDDLLTRYNKLLRQYEVLHKENEVLISLLKIHGIEYETRMKEDMNKPIYSLVSVPTITLSIDERIRLFQSLFKGREDVFA RRWFSKTTGKSGYQPVCINEWKQGICDKKRYRCAICPNRNFAPLTSQDMYRHLEGKDEYCCDVVGLYAIMQDNNCAFLCA DFDDKNCKYGYKEDVLAYVGVCREWLIPYAIERSRSGNGAHVWIFFEAPLPASKARRLGNAILTEAMTRNGQMSFNSYDR FFPNQDYLPEGGFGNLVALPLQGQARRKENSVFVDNDFLVYKDQWAFLYNLKKIQESTIDQLLRLHYQEELGKLSMSSES KPWVTPLPQNITQEDFHAKVEIIKADKLYIPLKAVSAKVLNHLKRIAAFKNPEFYSKQALRLSTYAIPRIISCFDITNEY LAMPRGCEDATRSFLNDNAVTYTITDKTNHGNKISVSFQGEEREEQLEAINALLPYTNGILHATTAFGKTVTAAAIIARK KVNTLILVHSKALLKQWHDRLTEFLNIDYPKHEEKNKRGRRKVFSPLGCFDSSGNTLHGIIDIALIQSCLDEDGVKPFVQ DYGMVIVDECHHVSSITFEQVLMSIKAHTIYGLTATPIRKDGHQPIIFMQCGPIRFSTDVKSQIAKQSFDRFLIPRFTSY NSILEDRLSIATLYKYLSEDEIRNNLIVEDICKAVNTGRTPIILTNRTAHVSVLAEKLKATIKNVISLTGAGTTREKREA MQRLQTIPDSEQLVIVATGKYIGEGFDYPRLDTLFLALPISWKGLLTQYAGRLHREYEGKKDVRIYDYIDIHEPICDSMY RKRLKGYAAIGYKTINTAQPTLFDHINDISSSIAENQIFNGSTFYRPYTSDLTKAKRSIVISSPKLYRTEQNPLVTLLKE LAQQGIEILITTVAENEQTAFIQSKGLSVKVKPKLSLYTTIIDKEVVWYGSINTLGYASKDDNMIKVTDIYLANELIKMI HKHS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Z1129 | NP_286664.1 | helicase | Not tested | TAI | Protein | 3e-147 | 41 |
| Z1568 | NP_287072.1 | helicase | Not tested | TAI | Protein | 3e-147 | 41 |
