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Name : serS (HMPREF0659_A6961) Accession : YP_003815002.1 Strain : Genome accession: NC_014371 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 717418 - 718707 bp Length : 1290 bp Strand : + Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGCTTACATTAAAGCTCATCAGTGAAGAAACTGAACGCGTCATCAAAGGACTGGAGAAGAAACACTTCAAAGGTGCACG TGAGGCAGTTGAGAAAGTATTGGAATATGACCGTTTGCGTCGTGAGACTCAGCAGAAGCTTGACACAAACAAGCAGCAGC AGAATCAGCTCTCGAAGCAGATTGGTGGACTGATGAAAGAAGGAAAGAAAGACGAAGCTGACAAGATAAAGGAAGAGGTA GCATTATTAAAATCTTCTGACAAGGCTCTTCAAGAGATAATGGATATGGCTCAGAAGGATATGACAGACGTGTTACTGAC AATTCCTAACATCCCTAACGAGATTGTACCTGAAGGTAAGGATGCTGAGGATAATGTTGTTGTAAAGGAAGGGGGCGAGA AGCCAAACCTACCTGCTGACGCATTGTGCCACTGGGACTTGCTGAAGAAGTTTAACTTGGTAGATTTCGATCTTGGTGTG AAGATTACTGGTGCTGGTTTCCCACTCTATATCGGTAAGATGGCACGCTTCCAACGTGCCTTAGAGGCATTCTTCCTCGA TGAAGCTCGTAAGAGTGGCTACTTGGAAGTACAGCCACCATTGGTAGTAAATCAGGAGTCTGGTCAGGCTACTGGTCAGT TGCCAGATAAGGAGGGACAGATGTATCATGCTAATCTTGACGACCTCTATCTCATCCCAACAGCTGAGGTTCCTGTTACA AATATCTTCCGTGACGAGATTCTCAACGAGCAAGACCTGCCTATTAAACGTTGTGCTTACTCTGCTTGTTTCCGTCGTGA GGCTGGTAGCTATGGTAAGGACGTACGTGGTTTGAACCGCTTACACCAGTTTGATAAGGTTGAGATTGTACGTATCGATA AGCCAGAGCACTCTTATCAGTCATTGGATGAGATGTTAGACCACGTTGAAGGTCTTTTAAAGAAGCTTGAATTGCCTTAT CACATCCTCCGTCTTTGCGGTGGAGACATTAGCTTCACAGCTGCTCTCTGCTATGACTTTGAGGTGTGGAGTGCTGCACA AGAGCGTTGGTTGGAGGTTTCAAGCGTTTCAAACTTCGAAAGCTATCAGGCAAATCGTCTGCATTGTCGTTTCCGTCATG CCGAAGATAAGAAGATTGAACTCTGCCATACATTGAATGGTTCAGCCCTTGCTCTGCCACGTATCGTTGCAGCTATCATC GAGAACAACCAGACCCCAGAGGGTATTCGTGTACCAAAGGTACTCGTTCCTTACTGTGGTTTCGAGATGCTCGACGACAA GATGGACTAA Protein sequence : MLTLKLISEETERVIKGLEKKHFKGAREAVEKVLEYDRLRRETQQKLDTNKQQQNQLSKQIGGLMKEGKKDEADKIKEEV ALLKSSDKALQEIMDMAQKDMTDVLLTIPNIPNEIVPEGKDAEDNVVVKEGGEKPNLPADALCHWDLLKKFNLVDFDLGV KITGAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQESGQATGQLPDKEGQMYHANLDDLYLIPTAEVPVT NIFRDEILNEQDLPIKRCAYSACFRREAGSYGKDVRGLNRLHQFDKVEIVRIDKPEHSYQSLDEMLDHVEGLLKKLELPY HILRLCGGDISFTAALCYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRFRHAEDKKIELCHTLNGSALALPRIVAAII ENNQTPEGIRVPKVLVPYCGFEMLDDKMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-68 | 43 |
