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Name : HMPREF0659_A6889 (HMPREF0659_A6889) Accession : YP_003814930.1 Strain : Genome accession: NC_014371 Putative virulence/resistance : Virulence Product : putative negative regulator of genetic competence ClpC/MecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 619619 - 622162 bp Length : 2544 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGATGAATCAATTCTCCCCAAAGGTCTCTGAAATACTTTCATTCAGCCGAGAGGAAGCAGAACGACTGACAAGTGCATC GGTTGCTCCTGAGCATATCATGCTCGCCATTCTGAGAGAGAAGTCAGGACCAGTATGGGAACTATTCAACCAATGGAAGG TTGATATAGATAATATAAAGAAAGAAATAGAAAGAAGACTTCAGGAGGAAACAATTGACCCAACTTCTTATGTGCCTGAT ATGCTTTTGAACGAGCAGGCAAATAACATATTGAAATTAGCTGTACTTGAGGCACGTATACAACATGCACAGACAGTAGA TATTCTTCATCTCTTCCTTGCAATATTACATGATTCTTCTAATAATGGTGCAAAGAAGGTAATGGAAGAAAATGGGTTTA ATTATAACAACGCAATATCGATGTTACAACAACGCGCAAACCAACCAAAGAATGGTATAGGAATGGCTGACGAGGAAGAA ATGGATGATGATATGATGTCATCTTCATCGTCTGAAGGCAGCAATAATGCCAAGACAACACAGGCTCCACGTACAAAATC AAAGACACCTGTACTCGATAGTTTCGGTACCGATCTTACTCAAGCAGCTGCCGAGGGTAAACTCGACCCTGTTGTAGGTA GAGAGAAAGAGATTATGCGTGTCAGTGAGATTCTTGGCAGAAGAAAGAAGAATAATCCTATTCTCATTGGTGAACCAGGT GTAGGTAAGAGTGCTATTGTCGAGGGTTTAGCACAACTTATTGTGAAGCATCTCACCTCTCCAATTCTCTTTAACAAACG CGTCATCACGCTTGACCTGACAGCTGTCGTGGCTGGAACAAAGTATCGTGGTCAATTTGAGGAGCGTATCCGTGCATTGA TTAAGGAAATCGAACAGAATCCAGACATTATCGTCTTTATTGATGAGATTCACACACTCATCGGAGCAGGTTCTTCACCA GGTTCAATGGATGCTGCTAATATCCTCAAACCAGCCTTGGCAAGAGGCACTATACAGTGTATCGGTGCAACAACACTTGA CGAGTATCGTAAGTCTATCGAGAAAGATGGTGCCTTAGAACGTCGTTTCCAAAAGGTACAGGTTGAGCCAACAACAGTTG AAGAGACATTACAGATTCTTGAGAATATCAAAGAGCGTTATGAAGCACATCATCATGTAAGTTATACAGAAGATGCGCTG AAGGCTTGTGTGAAGTATGCTGACAGATATATCACTGATCGTTTCTTCCCAGATAAGGCAATAGACATTATTGACGAAGC AGGTTCACGTATCCACCTGCAACATGTAAAGGTGCCACAGGCTATTCTCGATATTCAGAAAGACATTGAAATAACGCGAG AGAAGAAGCAAGCTGCTGTAAAGAATCAGAACTTTGAGTTGGCTGCAAGTTTCCGTGATAAGCAGACTGAATTAGAAAAG ACACTCAAAGAGGAGCAGGAGAAATGGCAGAAAGGTGATACCGAAGATAAGGTTGAAATCAATGAAGAAGCCATTGCTGA TGTTGTCTCTATGATGACAGGCGTACCGGTACAGCGCATGCAGGAGGCAGAAGGCATCCGATTGAAGAATATGGATGCTG AACTCAAGCAGGTTGTTATCGCACAAGATGCAGCCATCGACAAGATGGTAAAGGCTATTCAGCGTAACCGTGTAGGTTTG AAGGATCCTAATCACCCTATTGGTGCATTTATGTTCTTAGGTCCTACGGGTGTGGGTAAGACTTATCTTGCCAAGAGACT TGCTGAGATGATGTTTGGTTCTGCCAATGCTTTGATACGCATTGATATGAGCGAATATACAGAAAGCTTCAACACCTCAC GCCTTGTTGGTGCGCCTCCAGGATACGTTGGCTATGATGAAGGCGGACAGTTGACAGAGAAAGTACGCCGTCATCCCTAC TCTATTGTCTTACTTGATGAGATAGAGAAGGCACATGGCAACGTATTCAATATGCTTTTGCAGGTACTTGACGAAGGTCG ATTGACAGATGGTAACGGCCGATTGATAGACTTCCGCAATACGGTGATTATTATGACATCAAATGCGGGTACACGTCAGC TGAAGGAATTCGGGCAAGGTGTCGGCTTTAAGGCAGCAAACTTGAATGGTCTTTCACAGAGTGAGGGTGACAAGGAGCGT GCTCGTGCTATCATTCAGAAGAGTCTTAGCAAGCAGTTCGCACCAGAGTTTCTCAACCGTTTGGACGAGATTATCACCTT CGACCAACTCGACCTCGAGGCTATCAAGAAGATTATCAACATTGAACTCAAGGGTTTGTTCAAACGTGTGCATGAATTAG GCTACGAAATGGAGATAACAGATGAAGCTAAGGAGTTTGTTGCAAGCAAGGGATATGACGTACAATTTGGTGCGCGTCCA TTGAAGCGTGCTATCCAAAATCATATCGAGGATGGACTGAGTGAACTGATTCTCTCTGGCGAAATCAAGGCTGGTGACAC TATCAAAGTATCTAAAGAGAAAGATAGTGAGAAACTAAAGTTTGATATTGTATCAGCTGAATAA Protein sequence : MMNQFSPKVSEILSFSREEAERLTSASVAPEHIMLAILREKSGPVWELFNQWKVDIDNIKKEIERRLQEETIDPTSYVPD MLLNEQANNILKLAVLEARIQHAQTVDILHLFLAILHDSSNNGAKKVMEENGFNYNNAISMLQQRANQPKNGIGMADEEE MDDDMMSSSSSEGSNNAKTTQAPRTKSKTPVLDSFGTDLTQAAAEGKLDPVVGREKEIMRVSEILGRRKKNNPILIGEPG VGKSAIVEGLAQLIVKHLTSPILFNKRVITLDLTAVVAGTKYRGQFEERIRALIKEIEQNPDIIVFIDEIHTLIGAGSSP GSMDAANILKPALARGTIQCIGATTLDEYRKSIEKDGALERRFQKVQVEPTTVEETLQILENIKERYEAHHHVSYTEDAL KACVKYADRYITDRFFPDKAIDIIDEAGSRIHLQHVKVPQAILDIQKDIEITREKKQAAVKNQNFELAASFRDKQTELEK TLKEEQEKWQKGDTEDKVEINEEAIADVVSMMTGVPVQRMQEAEGIRLKNMDAELKQVVIAQDAAIDKMVKAIQRNRVGL KDPNHPIGAFMFLGPTGVGKTYLAKRLAEMMFGSANALIRIDMSEYTESFNTSRLVGAPPGYVGYDEGGQLTEKVRRHPY SIVLLDEIEKAHGNVFNMLLQVLDEGRLTDGNGRLIDFRNTVIIMTSNAGTRQLKEFGQGVGFKAANLNGLSQSEGDKER ARAIIQKSLSKQFAPEFLNRLDEIITFDQLDLEAIKKIINIELKGLFKRVHELGYEMEITDEAKEFVASKGYDVQFGARP LKRAIQNHIEDGLSELILSGEIKAGDTIKVSKEKDSEKLKFDIVSAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 7e-171 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HMPREF0659_A6889 | YP_003814930.1 | putative negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 1e-146 | 49 |
| HMPREF0659_A6889 | YP_003814930.1 | putative negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 2e-180 | 48 |
