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Name : HMPREF0659_A6123 (HMPREF0659_A6123) Accession : YP_003814189.1 Strain : Genome accession: NC_014370 Putative virulence/resistance : Unknown Product : putative type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 1418710 - 1420215 bp Length : 1506 bp Strand : - Note : identified by match to protein family HMM PF02384 DNA sequence : ATGGCAAAACAAAATACAGCTGATATTGGATTTGAAAAGGAAATATGGAAAGCAGCAGATTTGCTTCGTGGCAATCTTGA TGCTTCCGAATACAAATCGGTAGTATTGGGATTGATTTTTCTAAAATACATCTCCGATAAGTTTGAGACCAAATATCAAG AATTAGTCAATAATGGTGAAGGATTCGAGGAAGACCGCGATGAATATATGGCGGATAATATTTTCTTTGTCCCACAAGAA GCACGGTGGAGTGTGGTAGCAAAAGCAGCCCATACACCAGAAATCGGTACGATAATCGACAATGCCATGCGTCTTATTGA AAAGGAGAATCTCCGTTTGAAAGGCATTCTGCCCAAAAATTTCGCCCGACCAGAATTAGACAAAAGGCGTTTGGGCGATG TGGTAGATTTATTTACCAATATTCAAATGAAAGAACATGGAGATTCCAAAGATATATTGGGACGTACATATGAATATTGT CTTTCTAAATTTGCAGAAGCAGAAGGGAAATTAGCAGGAGAATTTTATACACCTGCTTGTATTGTTCAAACACTTGTCGA AGTTCTGAAACCTTATCACGGACGAGTATATGACCCTGCTTGCGGATCTGGTGGAATGTTCGTACAGTCTGCCAAATTCA TAGAAAGGCATCAAGGCAATATCAAAGATATTTCTGTCTATGGTCAAGACAGCAATCCTACGACATGGAAGATGGCTCAG ATGAATCTTGCCATTCGAGGTATTGAGGCTGATCTGGGTAAGTTTAATGCAGATACATTCTTTGATGATCAACACCCCAC ATTAAAAGCAGATTTCATCATGGCTAATCCGCCTTTCAATCTCAGTGATTGGGGAGCAGACAAGTTGCAAGATGATGTGC GTTGGAAATTTGGCATTCCACCATCTGGCAATGCCAACTTTGCATGGTTGCAACACATGATTCATCATTTATCTCCCAAA GGGAAAATAGGTATGGTATTGGCAAATGGTTCTTTATCTTCACAGACAGGAGGGGAAGGAACGATTCGTGAAAATATCAT TAAAGCCGATTTAATAGAAGGTATCGTTGCCCTACCCTCACAGTTGTTTTATACCACAGGTATTCCTGTTTCTCTATGGT TCCTCAATCGAGAGAAGAAACAGAAAGATAAAATTCTGTTTGTAGATGCAAGAAACATGGGAACAATGGTTACTCGCAAA CTTCGTGAGCTCCAAGAAGCAGATATTAGAAAGATTGCGGACACTTTTGATAAATATAGTGATGGTACACTTGAGAATGA AAAAGGCTTCTGTGCAGTTGTAGCCCTTGGTGATGTGGCAAAACAAGACTATATTCTTACCCCTGGACGTTATGTCGGCA TTGCAGAACAGGAAGACGACGGTATTCCTTTCCAAGAGAAGATGGACAAACTCACAACCGAATTGTCCGATTTATTTGCC CAATCTCATGATTTGGAGGATGAGATACGAAAACAGTTGGCAAGCATAGGTTTCACTATCAAGTAA Protein sequence : MAKQNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFETKYQELVNNGEGFEEDRDEYMADNIFFVPQE ARWSVVAKAAHTPEIGTIIDNAMRLIEKENLRLKGILPKNFARPELDKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYC LSKFAEAEGKLAGEFYTPACIVQTLVEVLKPYHGRVYDPACGSGGMFVQSAKFIERHQGNIKDISVYGQDSNPTTWKMAQ MNLAIRGIEADLGKFNADTFFDDQHPTLKADFIMANPPFNLSDWGADKLQDDVRWKFGIPPSGNANFAWLQHMIHHLSPK GKIGMVLANGSLSSQTGGEGTIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNREKKQKDKILFVDARNMGTMVTRK LRELQEADIRKIADTFDKYSDGTLENEKGFCAVVALGDVAKQDYILTPGRYVGIAEQEDDGIPFQEKMDKLTTELSDLFA QSHDLEDEIRKQLASIGFTIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 8e-148 | 58 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-146 | 58 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 4e-148 | 58 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 9e-115 | 47 |
