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Name : hsdR_1 (HMPREF0659_A6116) Accession : YP_003814183.1 Strain : Genome accession: NC_014370 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR family Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 1410458 - 1413553 bp Length : 3096 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGCCCTTCACAGAAGATAATTACGAAAAAGCACTGATATCCCTCTTTGAGGGAATGGGCTATCAATATTTGTACGGTCC AAATATTGAAAGAGACTACTATGTGCCATATTATGAAGCACAATTAGAAGAAAGTCTGCAAACTGTTAATCCAAAGAAGC CACATGCAGCCATTCACGAAGCGATTATCAAACTACGCAATATTGATATGGGTAGTTTGGCGCAGCGTAATGAAACTTTT ACAGACTATTTGCAGCATGGCATAGAAGTTTCTTATTTCAATGGCAAGGAAATGCGCAATGAAATGGTCTATTTGATAGA CTTTGAGCATACGGAAAAAAATACTTTTCAAGTCATCAACCAATGGACATTCATTGAAAATGCAGAAAAACGTGCCGATA TCATTGTATTTGTGAATGGTTTACCATTGGTGGTTGTAGAATTAAAATCCCCTTCTCGTGAAGAAACAGATGCTTCAGAA GCATATCTTCAACTCCGCAATTATATGAAAGATATACCATCGTTGTTCGCTTTCAATATGTTCTGTGTAATGAGCGATAT GGCTCTTTCCAAAGCTGGAACAATTACTAGCAAGGAAGATCGCTACATGGAATGGAAAACAAAAGATGGCAATTATGAAA GTACGGAATTTATCGATTATGATACCTTTTTTGAAGGAATATTTCAAAGGGAACGACTCTTAGACATAATCAAGAACTTT ATCTGTTTTGCCAAAGAAGAAAAAGGGAGTGCCAAGATATTAGCAGGGTATCATCAGTATTTTGCAGTGAAGAAAGCCAT CGAACGTACCAAACATGCTACAGTAAGTAATGGTAAAATCGGTGTGTTCTGGCATACGCAAGGCAGCGGTAAATCATTGT CAATGGTTTTCTACGCCCACTTGCTGCAACAAGAGTTATCACAGCCCACAATAGTTGTGATTACCGACCGCAATGATTTG GACGATCAACTTTATACCCAATTCTCTAAATGTAAGGAGTTCTTGCGTCAAACACCAGTGCAAGCCAATAGTCGTGAGAA TCTAAAAGAGCTATTGAGTGGACGAGAAGCTAATGGCATTATCTTCACAACCATGCAGAAATTTGAGGAGTCTGACGAAC CTTTGTCAGAGCGAAGAAATATTATCGTAATGACTGATGAGGCACATAGAGGACAATATGGCTTTGAGGAAAAAGTCGAT GCCACTACAGGTAAGGTCTCTATCGGCACGGCAAGAATCATTCACAATTCACTACCCAATGCTTCATATATTGGCTTTAC TGGTACACCTATCTCTACTAAAGACCGAGATACCGTAGAGGTTTTTGGTGATTATATTGATATTTATGACATGACGCAGG CGGTTAATGACGGTGCTACTTGTCCTGTATATTATGAATCGAGAGTTATTAATCTAAATCTTGACGATGCAACCTTGCAA GCCCTTGATGACGAATACGAGCTGTTGGCTGAAGAAGGTGCAACGACAGAACAGATAGAGAAAAGCAAGAAGGAGATGTC GCACTTGGAAGAGATACTCGGTGCACCAGCTACCATCGATTCTCTTTGCCAAGACATTCTCAAACACTATGAGGAAAACC GCCAATATGAATTGACAGGTAAGGCCATGATAGTAGCATATTCGCGTCCCATAGCCATGAGCATTTATCATCGACTGTTG GAGCTTCGCCCAACTTGGACAGATAAAGTAAAAGTTGTCATGACGGGCAGCAACCAAGACCCAGAAGAATGGCACGACAT TATCGGAAACAAGCAGTATAAGAAAGAACTTGCCAGACGATTTAAGGATGACAATGACCCGATGAAGATTGCTATTGTGG TCGATATGTGGCTCACAGGCTTCGACGTTCCCTCATTGGCAACTATGTATGTTTACAAACCAATGAGCGGACATAACCTA ATGCAAGCCATTGCGCGAGTGAACCGCGTATTCAATGGCAAAGTGGGTGGATTGGTTGTTGACTATATCGGTATTGCCAA GGCCTTGAAAGAAGCCATGCGTGATTATACGGGGCGCGACAGAAAGAACTTTGGAAACCCAGATATCAAAGGCATGGCTT TTACAAAGTTCAAAGAGAAGTTGGAAGTGTGCCAAGACTTATTTCATGGTTATAATTATAGTAGGTTCCACACAGGGACA GATGCTGACCGTGCTAAATTAATCAAAGGTGGTGTAAACTTCATGTTGGCAACCGATAAACAAGAACAGTTACCGCTCTA TATGAAAGAAGCAGCATTGCTGCACAATTCCATAACTCTTTGCCGAAGCCTGTTGAATAAAGAGCAACGCTTCTTGGCTG CATTCTTTGAGACTGTACGCACTTTACTCTCCCGAATGACAGGCAAAGGAAAAGTTACGAAGAAAGAAATCAATGCTCGT ATTAGCGAGTTGCTGAAACAAAGTGTAAAAAGTGAAGGTGTAATCAATCTTTTCTCTGATGTTAAAGCCGAGTTCTCCCT CTTTGATACAGCCTTCTTAGATGAAATTTCTAAGATGAAAGAAAAAAATATAGCTGTAGAACTGCTTAAAAAGTTATTAG CAGAGAAAGTGGCACTCTATCAAAAGACCAATATCGTGCAGTCAGAGAAATTCTCTGACCTGCTCAATCGTTCTTTATCC AACTATTTGAAAGGATTACTCACCAATGAAGAAGTTATCCAAGAACTTTTGCAGTTAGCAAAAGAGATTGCTTCAGCCGA TTCAGCAGCTAATGAACTTGGACTCACTCCTGAAGAAAAGTCATTCTATGATGCCTTGACCAAACCGCAAGCAATCCACG ACTTCTATAGTAATGAAGAACTGGTTGCCATGACAAAAGAACTTACTGACTCTCTACGTAAGAACCGCACTATTGATTGG CAAAAGAAAGAATCAGCCCGTGCCGGTATGCGCAGAATGATTAAACATCTTCTGAAAAAATATCATTACCCACCAGAGGA AGCTGCCAATGCATTAGAAACTGTCATTAAGCAATGCGAGCAGTGGACGGATAATGGACAAGATAATTATACAACTCACA CAGCCAAGATGTATGAAATTTATGAAGATGAAATACAGATGGCTGCAGAACCATAA Protein sequence : MPFTEDNYEKALISLFEGMGYQYLYGPNIERDYYVPYYEAQLEESLQTVNPKKPHAAIHEAIIKLRNIDMGSLAQRNETF TDYLQHGIEVSYFNGKEMRNEMVYLIDFEHTEKNTFQVINQWTFIENAEKRADIIVFVNGLPLVVVELKSPSREETDASE AYLQLRNYMKDIPSLFAFNMFCVMSDMALSKAGTITSKEDRYMEWKTKDGNYESTEFIDYDTFFEGIFQRERLLDIIKNF ICFAKEEKGSAKILAGYHQYFAVKKAIERTKHATVSNGKIGVFWHTQGSGKSLSMVFYAHLLQQELSQPTIVVITDRNDL DDQLYTQFSKCKEFLRQTPVQANSRENLKELLSGREANGIIFTTMQKFEESDEPLSERRNIIVMTDEAHRGQYGFEEKVD ATTGKVSIGTARIIHNSLPNASYIGFTGTPISTKDRDTVEVFGDYIDIYDMTQAVNDGATCPVYYESRVINLNLDDATLQ ALDDEYELLAEEGATTEQIEKSKKEMSHLEEILGAPATIDSLCQDILKHYEENRQYELTGKAMIVAYSRPIAMSIYHRLL ELRPTWTDKVKVVMTGSNQDPEEWHDIIGNKQYKKELARRFKDDNDPMKIAIVVDMWLTGFDVPSLATMYVYKPMSGHNL MQAIARVNRVFNGKVGGLVVDYIGIAKALKEAMRDYTGRDRKNFGNPDIKGMAFTKFKEKLEVCQDLFHGYNYSRFHTGT DADRAKLIKGGVNFMLATDKQEQLPLYMKEAALLHNSITLCRSLLNKEQRFLAAFFETVRTLLSRMTGKGKVTKKEINAR ISELLKQSVKSEGVINLFSDVKAEFSLFDTAFLDEISKMKEKNIAVELLKKLLAEKVALYQKTNIVQSEKFSDLLNRSLS NYLKGLLTNEEVIQELLQLAKEIASADSAANELGLTPEEKSFYDALTKPQAIHDFYSNEELVAMTKELTDSLRKNRTIDW QKKESARAGMRRMIKHLLKKYHYPPEEAANALETVIKQCEQWTDNGQDNYTTHTAKMYEIYEDEIQMAAEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 41 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 41 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 41 |
