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Name : lysS (HMPREF0659_A6046) Accession : YP_003814114.1 Strain : Genome accession: NC_014370 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1304335 - 1306071 bp Length : 1737 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAACGTTTTAGAATTATCTGAGCAGGAGATTGGTCGCCGCCAAAGCCTGCAGGAATTGCGTGAGATGGGGATTGATCC CTATCCAGCAGCAGAGTTTCCAACGAATGCTTACTCTACTGATATTAAAGAGCAGTTCAAGGAGGGCGAACAGCGTGAGG TCGTAATCGCTGGTCGTATGATGGGACGCCGTGTCATGGGCAAGGCTTCCTTCGCTGAGTTACAGGATAGCAAGGGTAGA ATCCAGGTTTATATCACTCGTGATGACATCTGTCCGGGTGAGGATAAAGAATTTTATAATAAGGTCTTCAAGAAGTTGCT CGATATTGGTGACTTCATCGGAGTGAAGGGTGAAGTGTTTAAGACACAGATGGGAGAAATCTCTGTTCATGCTAAGGAGA TTACCGTTTTGTCTAAGAGCTTGAAGCCACTGCCTGTTGTTAAGTATAAGGACGGTGAGGCATACGATAAGTTTGAAGAC CCAGAGCAGCGTTATCGTCAGCGTTATGTTGACCTCGTTGTGAATGAGGGTGTGAAAGATACCTTCTTGAAGCGTGCTAT CGTATTGCGTACCATGCGTAAGTTCTTCGATGAGGCTGGTTATACTGAGGTAGAAACTCCTACCTTGCAGAGTATTGCTG GTGGTGCAAGTGCACGCCCATTCATCACTCACTTCAATGCTCTCAACGTTGATATGTATATGCGTATCGCAACAGAGCTT TATTTGAAGCGTCTGATTGTTGGTGGTTTCGAGGGTGTTTATGAAATCGGTAAGAACTTCCGTAACGAGGGTATGGACCG CTTCCATAATCCAGAGTTTACTTGTATGGAGCTTTATGTACAATACAAGGACTACAACTGGATGATGTCTTTCACTGAGA AACTTCTTGAGAAGATTTGTATAGAGGTAAATGGTAAGCCAGAGGTACAGGTTGGTGACAAGGTTATCAGCTTCAAGGCA CCATTCCGTCGTCTACCTATCCTTGATGCAATCAAGGAGAAGACAGGTTTCGATCTCTATGGTAAGACAGAGGAGGAAAT CCGTAATATTGCTGTTAACGAGTTGAAACTCGAAGAAATTGATGAGAGTTTCGGTAAGGGTAAGCTCATAGATGAAATCT TTGGTGAGTTCTGTGAGGGTACATATATCCAACCAACCTTCATCACTGACTATCCAGTTGAGATGTCACCACTGACCAAG ATGCACCGTTCTAAGCCAGGACTGACAGAGCGTTTTGAGTTGATGGTAAATGGAAAGGAGCTGGCTAATGCTTATTCAGA GCTGAATGACCCAATTGATCAGGAAGAACGTTTCGTTGAACAGATGCGTTTGGCTGACAAGGGTGACGACGAGGCGATGA TTATCGACCAAGACTTCCTTCGCTCTTTGCAGTATGGTATGCCTCCAACTTCTGGTATCGGTATTGGTATTGACCGTTTG GTAATGCTGATGACTGGTAAGGAATACATCCAGGAAGTATTGCTCTTCCCACAGATGAAGCCAGAACCAAAGATTCCACA GTCTTCTGTTAAGGAATGGGCTGAGCTTGGTGTTGCTGAAGAGTGGGTATATGTTTTGCGCAAGGCAGGCTTCAACCTCA TCTCTGACATTAGAGAGGAGAAGGCACAGGGCTTGCAGCAGAAGCTCGGAGAAATCAATAAGAAGTACAAGCTCGGTTAT GAGAAGCCTTCTGTTGAGGCTATTCAGCAGTGGATTGACGGAGCTAACGAAAAGTAA Protein sequence : MNVLELSEQEIGRRQSLQELREMGIDPYPAAEFPTNAYSTDIKEQFKEGEQREVVIAGRMMGRRVMGKASFAELQDSKGR IQVYITRDDICPGEDKEFYNKVFKKLLDIGDFIGVKGEVFKTQMGEISVHAKEITVLSKSLKPLPVVKYKDGEAYDKFED PEQRYRQRYVDLVVNEGVKDTFLKRAIVLRTMRKFFDEAGYTEVETPTLQSIAGGASARPFITHFNALNVDMYMRIATEL YLKRLIVGGFEGVYEIGKNFRNEGMDRFHNPEFTCMELYVQYKDYNWMMSFTEKLLEKICIEVNGKPEVQVGDKVISFKA PFRRLPILDAIKEKTGFDLYGKTEEEIRNIAVNELKLEEIDESFGKGKLIDEIFGEFCEGTYIQPTFITDYPVEMSPLTK MHRSKPGLTERFELMVNGKELANAYSELNDPIDQEERFVEQMRLADKGDDEAMIIDQDFLRSLQYGMPPTSGIGIGIDRL VMLMTGKEYIQEVLLFPQMKPEPKIPQSSVKEWAELGVAEEWVYVLRKAGFNLISDIREEKAQGLQQKLGEINKKYKLGY EKPSVEAIQQWIDGANEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-98 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003814114.1 | lysine--tRNA ligase | VFG1668 | Protein | 6e-99 | 45 |
