Gene Information

Name : HDN1F_00360 (HDN1F_00360)
Accession : YP_003809286.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 51164 - 51838 bp
Length : 675 bp
Strand : -
Note : silverDB:HdN1F44

DNA sequence : 
ATGAAAATCCTGCTGGTAGAAGACGAACCCAAAACCGGCGACTACCTAAAGCAGGGCTTGTGCGAAGCGGGCTTTCCTAC
CGACTGGGTACAGGATGGCATCAGCGGCAGCCACCAAGCGCTGCATGAAACCTACGACCTCATCATCCTCGACGTCATGC
TTCCCGGCCGCTCCGGCTGGGAAGTGCTGCAAGACATCCGCAGCGCAGGCAAAGACATGCCCGTATTATTCCTGACCGCA
CGCGACGAAGTGAACGACCGCGTGCGTGGCCTTGAAGCCGGTGCCGATGATTACTTAGTAAAACCTTTCGCCTTTGCAGA
ACTGCTTGCCCGCATCCGCACCCTGCTACGCCGCGAGCGCAGCCGTGAGCCAGACGTGTTGAACGTTGCCGATCTTGAAC
TGGATTTACGCACCCGCCGCGCAACGCGCAGCCACCAGCGCATCGAATTAACCGCTCGCGAATTTGCCTTACTTGCACTT
CTGATGCGTCGGCGCGGCGAAATCCTTCCGCGAGCCCTCATTGCATCGCAAGTCTGGGATATGAATTTTGAAAGCGACAC
CAACGTCGTCGAAGTCGCGGTACGGAGGCTGCGCGCCAAAATTGACGATCCCTTTGAACCGCGCCTGATACACACAGTGC
GCGGCATGGGATACACGCTAGAAGAAAAGCGCTAA

Protein sequence : 
MKILLVEDEPKTGDYLKQGLCEAGFPTDWVQDGISGSHQALHETYDLIILDVMLPGRSGWEVLQDIRSAGKDMPVLFLTA
RDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLRRERSREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLAL
LMRRRGEILPRALIASQVWDMNFESDTNVVEVAVRRLRAKIDDPFEPRLIHTVRGMGYTLEEKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-50 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-49 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0197 Protein 1e-65 70
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0083 Protein 7e-64 68
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0638 Protein 7e-57 66
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0125 Protein 2e-60 63
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0111 Protein 2e-59 61
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0308 Protein 3e-56 59
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0347 Protein 2e-53 57
HDN1F_00360 YP_003809286.1 heavy metal response regulator HE999704.1.gene1528. Protein 4e-27 43
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_007793.3914065.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_002758.1121390.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_010079.5776364.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_002952.2859858.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator AE015929.1.gene1106. Protein 1e-24 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_007622.3794948.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_003923.1003417.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_013450.8614146.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_002951.3238224.p0 Protein 2e-28 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator NC_002516.2.879194.p Protein 1e-24 41
HDN1F_00360 YP_003809286.1 heavy metal response regulator BAC0288 Protein 3e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_00360 YP_003809286.1 heavy metal response regulator VFG0596 Protein 1e-50 57
HDN1F_00360 YP_003809286.1 heavy metal response regulator VFG1390 Protein 7e-34 44
HDN1F_00360 YP_003809286.1 heavy metal response regulator VFG0473 Protein 4e-24 42
HDN1F_00360 YP_003809286.1 heavy metal response regulator VFG1389 Protein 5e-29 42
HDN1F_00360 YP_003809286.1 heavy metal response regulator VFG1386 Protein 1e-27 41