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Name : kdpB (HDN1F_36030) Accession : YP_003812813.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : - Position : 4344258 - 4346264 bp Length : 2007 bp Strand : - Note : silverDB:HdN1F4797 DNA sequence : ATGAGCGATATTCGTTCCGGGCATGATGTGAAAGCCGCCCTCGTGGATTCATTCGTAAAACTCGCACCACAACATGCCAT CAAGAATCCAGTTATGGCGCTGGTATGGGCCGGTACGCTGGTAACGGCGCTGGCAAGCCTTTTGGGGTGGAGCAGCCCGG GGTTCGGCTGGGCTGTGACCCTGATCCTGTTCGTTACAGTACTGTTTGCCAATTTCGCAGAAGCCATTGCCGAAGCGCGT GGCCGAGGCCAAGCCGCGTCGTTGCGCCGCGCCCGCAAGGATCTTGTGGCCCGACGGCTCGACAAAGCGGGCAAAGAAAC CAGCCTTCCTGCGGCAGAATTGCGTCCGGGGGATCTCGTCGTGGTGGAAGAAGGCCAACTGGTGCCAGCGGATGGTGAAA TTATCGAAGGCATGGCCACCATCAACGAAGCCGCCGTAACCGGTGAATCCGCACCGGTACTGCGCGAAGCCGGAACCGAC CGCTCCGGCGTGATCGGTGGCACCAAAGTGCTTTCCGACCGCATCGTGGTGCGAGTAACGGCAGAGCCAGGGAGCAGCTT TCTGGATCGCATGATCGCGCTGGTAGAAGGCTCCAACCGCCAGAAAACTCCCAATGAAGTGGCGCTGGGTATTTTGCTGG CCATCATGACATTGACCTTTTTGATCGTAGTGGTGAGCCTGCCGTTCATTGCAGGGTTCGTCGGCGTAAAAACCGATCTG GTACTGCTGGTGGCGCTGCTGGTGTGCCTGATTCCTACCACCATCGGCGGTTTGTTGCCGGCGATTGGTATTGCTGGTAT GAATCGGGCCCTTAAGGCCAACGTTCTGGCAAAATCCGGTAAGGCGGTTGAGGTAGCGGGTGATGTGGATGTGCTGTTGC TCGACAAAACCGGCACCATTACCCACGGCGACCGGCAGGCCACTGCGTTTCATACGCTGGCCGGCGTAGATGCCGCGCAG CTTCGTCAGGCTGCATTGCTGGCTTCGCTGGCCGATCCGACGCCGGAAGGCAAGTCGATTGTGAAACTTGCGCGCGAGCG GAATGAAAAAATCACCGAACCCGAAGGCTCGCATTTTGTGGCATTTTCGGCCCAGTCACGCATGTCAGGTGTAGACCTTG CCGATGGCCGCACGATCCGCAAGGGCGCCATGGATTCCATCGTCCACCACGCTCAGCGCCTGGGTGGCCACATTCCGCAG GAGCTTGAGGTGCGCGTTGCCGAGGTGGCCCGTAAGGGTGCAACTCCGCTGGTGGTCAGTGAAGGTCGCCACATTCTCGG CGTTATAGAGCTTTCGGATGTCATCAAACATGGCATCAAGGAACGCTTTGCGCGACTGCGCGCCATGGGCATCAAAACGG TGATGATCACCGGCGACAATCCGCTCACCGCCGCCAATATTGCCGCAGAAGCCGGCGTAGATGACTACATCGCAGAAGCC CGTCCGGAAGATAAGCTGGCTCGAATCCGCAGCGAGCAACAGGAGGGCCGTCTGGTGGCCATGGTGGGTGATGGTACCAA CGACGCACCTGCGCTGGCGCAAGCCGATATCGGGCTGGCTATGAACTCCGGCACGCAGGCGGCGCGGGAAGCCGGCAACA TGGTGGATCTGGATTCCGACCCCACAAAACTGCTTCAGGTTGTGGAAATAGGCAAACAACAGCTGATCACGCGCGGCGCA CTCACGACGTTTTCCTTGGCGAATGACGTGTCCAAATACTTCGCCATCCTGCCGGCACTGTTTGCCGCCGCCATTCCACA AATGGCGGTGCTGAACGTGATGCAACTGGCCAGTCCGGAAAGTGCGGTGCTTTCAGCGCTGATCTTCAATGCCATCATCA TTCCGCTTCTTGTACCGCTAGCCTTGCGTGGCGTTCGTTTCAAGCCTGCCAGTGCTACGGAACTGTTGCGCAACAACATG CTGATCTACGGTGCAGGCGGTATTGTGCTTCCGTTCATTGCCATAAAAATCATTGATGTGCTGGTTTCCAGCCTGTTTAT CGTGTGA Protein sequence : MSDIRSGHDVKAALVDSFVKLAPQHAIKNPVMALVWAGTLVTALASLLGWSSPGFGWAVTLILFVTVLFANFAEAIAEAR GRGQAASLRRARKDLVARRLDKAGKETSLPAAELRPGDLVVVEEGQLVPADGEIIEGMATINEAAVTGESAPVLREAGTD RSGVIGGTKVLSDRIVVRVTAEPGSSFLDRMIALVEGSNRQKTPNEVALGILLAIMTLTFLIVVVSLPFIAGFVGVKTDL VLLVALLVCLIPTTIGGLLPAIGIAGMNRALKANVLAKSGKAVEVAGDVDVLLLDKTGTITHGDRQATAFHTLAGVDAAQ LRQAALLASLADPTPEGKSIVKLARERNEKITEPEGSHFVAFSAQSRMSGVDLADGRTIRKGAMDSIVHHAQRLGGHIPQ ELEVRVAEVARKGATPLVVSEGRHILGVIELSDVIKHGIKERFARLRAMGIKTVMITGDNPLTAANIAAEAGVDDYIAEA RPEDKLARIRSEQQEGRLVAMVGDGTNDAPALAQADIGLAMNSGTQAAREAGNMVDLDSDPTKLLQVVEIGKQQLITRGA LTTFSLANDVSKYFAILPALFAAAIPQMAVLNVMQLASPESAVLSALIFNAIIIPLLVPLALRGVRFKPASATELLRNNM LIYGAGGIVLPFIAIKIIDVLVSSLFIV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 6e-141 | 55 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 6e-141 | 55 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 6e-141 | 55 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 6e-141 | 55 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 7e-142 | 55 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 5e-141 | 55 |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 5e-139 | 54 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 4e-139 | 54 |
