Gene Information

Name : HDN1F_35830 (HDN1F_35830)
Accession : YP_003812795.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Resistance
Product : ABC transporter atp-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 4321610 - 4322338 bp
Length : 729 bp
Strand : -
Note : silverDB:HdN1F4770

DNA sequence :
ATGTCGATAGAAGCTGGCAACGTGCAGAACTCTTTGGCGATCTGCGCCGAAAATCTGAGTAAATCCGTCGAAATGGACGC
TGAAATCCTGCAACTGCTCGATCAGGTAAACCTAACCGTGCGCGTGGGCGAGAGCCTTGCGATTGTGGGCAGCTCTGGAT
CGGGAAAATCGACCTTGCTCGGGCTGTTGGCGGGCTTGGATGTGCCGACCAGTGGGCGGGTGGTGCTGGATTCGCAGGTC
ATCAGCACGATGAACGAGGATCAGCGTGCGGCGGTTCGCGCTGGGCGCGTTGGGTTTGTGTTTCAGTCGTTTCAACTGCT
ACCGAACCTGACGGCGCTGGAAAACGTAATGTTGCCCTTGGAGCTGCTGCACGATCGCGAAGCGGCCCGAAAAGCCACCG
AAATGCTCGCTCGCGTGGGGCTTGCTGCGCGGGGCGCGCATTACCCGCGCCAGCTTTCAGGAGGAGAACAGCAGCGCGTA
GCCCTTGCGCGTGCCTTTGTCGTTCACCCAACGATTCTCTTTGCCGACGAGCCTACTGGAAATCTGGATTCGCGTACCGG
CGAGCGAATCATGGATTTGCTTTTTGAACTGAACCGCGAGCTAGACACGACGTTAGTGCTGGTCACTCATGACGCTCGTT
TGGCGGATCGCTGCCAGCGCGAATTACGGCTCGAATTCGGGCGGGTGGTGGAGCATGGGAATCGCGATAAAACGGAGACG
CAGCCATGA

Protein sequence :
MSIEAGNVQNSLAICAENLSKSVEMDAEILQLLDQVNLTVRVGESLAIVGSSGSGKSTLLGLLAGLDVPTSGRVVLDSQV
ISTMNEDQRAAVRAGRVGFVFQSFQLLPNLTALENVMLPLELLHDREAARKATEMLARVGLAARGAHYPRQLSGGEQQRV
ALARAFVVHPTILFADEPTGNLDSRTGERIMDLLFELNRELDTTLVLVTHDARLADRCQRELRLEFGRVVEHGNRDKTET
QP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-24 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-24 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-24 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-24 42
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 4e-12 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_35830 YP_003812795.1 ABC transporter atp-binding protein NC_012469.1.7686878. Protein 5e-32 49
HDN1F_35830 YP_003812795.1 ABC transporter atp-binding protein NC_008702.1.4606598. Protein 8e-30 48
HDN1F_35830 YP_003812795.1 ABC transporter atp-binding protein CP001581.1.gene598.p Protein 6e-26 42
HDN1F_35830 YP_003812795.1 ABC transporter atp-binding protein CP001581.1.gene798.p Protein 4e-26 41