|
Name : HDN1F_35270 (HDN1F_35270) Accession : YP_003812739.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : helicase Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 4265200 - 4267398 bp Length : 2199 bp Strand : + Note : silverDB:HdN1F4693 DNA sequence : GTGGCTGGCCGCGTGGCCAGGTTCGTTTTTCACTCAACTACACCCTTGCGGGATCACATCCCCGCATGGGCGGTGCTGTC TCGCAAGTTTCATCTCACTTTTTTAAGCAAGAGGAAACGCAGCATGACAGCAGAGCTTTTAATCCCCGCGACAGATGCGA CACCGACCATGTCGCTTCACCAATTTATCAATGATTTTGGCAGCGATTTGCTACACGCCGTAGAGCGGGAACTGCCGCCG GTGTACGCCGGAGCGCGCCCCGAACATCGTGATCAGGTGCTCGACGCATTGAAGCGCAAACCGTTTGACGCCCAGCGTGA AGCGGTGCACGCCGCCACAGCGTTACTGGTCGATAAAGGCGAGCAGGCGTGTGTTTTGAACTGCGACATGGGTACGGGAA AAACGATGATGGCCATTTGTGCGGCGGCAATTCTGCACGCGGAGGGCTATCGTCGAATGCTGATACTTGCACCGCCACAC CTTGTATACAAATGGAGGCGCGAGATTCTCGACACCGTACCCAATGCTGAAGTCTGGGTGCTCAATGGCCCGGATACTTT AGCCAAGCTATTGAAATTTCGCGAACTGCTGGGGGTTAACCCCAAAGGCCCGCAATTTTTCATTATGGGGCGTGTACGGA TGCGGATGGGCTTTCACTGGCGCCCCGCGTTTGGTGTACGCAACCACTACTCGCTCGAAGCGGCGGATGGATGTGACAGC GACTCTCCCAAGGTGCGCCGTCGTACCACCTTTGCGTGTTGCCCCGATTGTGGGCAGGCGATTACGGGTGAAAACGACCG TCCCCTGCATCCTGACGAGCTGGCTCATGCGGATCGCCGTACAGCGTGTTCGCATTGTGGCGGCCGTTTGTGGACGCTGA TGCGCCCATGTGCACAACGTCCTCGCCAAGAACTGGTGATGGATACGGTGCAGCAGCTCCCCACCATTGGCCCAAAAACG GCGCATCGACTGATGAACCTGTTTGGCGAGGATACCTTGGCGGATATGCTCTCCGACAACCTCTATGCCTTCATCAACCT GATGGATGACGAGGGAAATCTTGTATTTTCGGATCGCCAAGCGAAACGAATGGAGCGTGCATTGGCCAACATGGAGTTGA GTTTTGGTGACGGACACTACCAAGCCACGGAGTTTGTGAAACGCTATTTTCCGCGTAACACGTTCGACGTGCTGATCGTA GACGAAGGTCATGAATACAAATCGGGAAGTTCTGCACAAGGGATGGCAATGGCAGTTTTAGCCACCCAAGTGCGAAAAAC CCTACTTTTAACGGGCACATTAATGGCGGGCTATGCTGACGACTTATTTTTTTTGCTATGGCGCATTATGACGCGCAGGA TGCGGGAAGATGGTTATCAGTACAACAGTCGTGGCTCATTGGGTTCTGCGTCAATGGCGTGGATGCGTGAGCATGGTGTT CTCAAAGAGATTTACAAGGAGAAGGAAAGTAGCGATCTTCGCACCGCCAAAGGCAAACGCACCACAGTGCGAACGTCCAA AGCGCCGGGGTTTGGCCCCAAAGGGATTGCTCGCTACGTTTTACCGTACACTGTTTTTTTGAAGCTCAAGGACATTGGCC AAAAGGTATTGCCTACCTACGACGAGATTTTTCACGAAGTAGACATGACCCCGGCGATGACCCACGTTTACAGCAAAATG CAGGAGACACTTTCCGATCATTTGAAAAAAGCGCTGCGGGCGGGAGATAACACGCTGCTGGGCGTAGTGCTGAACGCACT ATTGGCTTGGCCAGAATGTTGTTTTCGTCCGGAAAACATCACGCACCCACGTGATCGCCAGAAAACGCTGCATTTCAATG CGGCGCTGTTTGGCGAGTACGAACCCACCCCAAAAGAGCAGGCGCTGATCGACCTCTGTCGTGACGAGCATGCTCAGGGG CGTCGGGTGCTGATTTATACGGTTTACACCGGCACACGGGACACCACTACCCGCCTCAAAACACTGCTGGCCCGCGAGGG ATTTAACGCAGCGGTGCTAAAGGCGACGGTGGCTACCGACAAACGCGAGGATTGGATTGTCGATCAGGTAGAGAGGGGCT GCGATGCCCTAATCACCAACCCAGAGCTGGTGAAGACCGGGCTGGATCTGCTGGATTTTCCGACCATTGTGTTTCTACAA ACTGGATACAATGTGTATGTGCGACCTGAAGTTGCTTGA Protein sequence : MAGRVARFVFHSTTPLRDHIPAWAVLSRKFHLTFLSKRKRSMTAELLIPATDATPTMSLHQFINDFGSDLLHAVERELPP VYAGARPEHRDQVLDALKRKPFDAQREAVHAATALLVDKGEQACVLNCDMGTGKTMMAICAAAILHAEGYRRMLILAPPH LVYKWRREILDTVPNAEVWVLNGPDTLAKLLKFRELLGVNPKGPQFFIMGRVRMRMGFHWRPAFGVRNHYSLEAADGCDS DSPKVRRRTTFACCPDCGQAITGENDRPLHPDELAHADRRTACSHCGGRLWTLMRPCAQRPRQELVMDTVQQLPTIGPKT AHRLMNLFGEDTLADMLSDNLYAFINLMDDEGNLVFSDRQAKRMERALANMELSFGDGHYQATEFVKRYFPRNTFDVLIV DEGHEYKSGSSAQGMAMAVLATQVRKTLLLTGTLMAGYADDLFFLLWRIMTRRMREDGYQYNSRGSLGSASMAWMREHGV LKEIYKEKESSDLRTAKGKRTTVRTSKAPGFGPKGIARYVLPYTVFLKLKDIGQKVLPTYDEIFHEVDMTPAMTHVYSKM QETLSDHLKKALRAGDNTLLGVVLNALLAWPECCFRPENITHPRDRQKTLHFNAALFGEYEPTPKEQALIDLCRDEHAQG RRVLIYTVYTGTRDTTTRLKTLLAREGFNAAVLKATVATDKREDWIVDQVERGCDALITNPELVKTGLDLLDFPTIVFLQ TGYNVYVRPEVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 59 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 59 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 59 |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 58 |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 57 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 3e-157 | 50 |
