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Name : HDN1F_35020 (HDN1F_35020) Accession : YP_003812715.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 4243241 - 4245370 bp Length : 2130 bp Strand : + Note : silverDB:HdN1F4658 DNA sequence : GTGGTGAGCTCACGAATTGAAGGGTTGTTGAGGCCGCCCATTGAATTTGCTTCAGCGATTGCATACAGCGCTGTTGCGGG TTTAATGATGGCTGCGCCTTATGAATTGATGATGACACCTACGGTGGCTGCGGCAACAGGAAGTGGCTTGCTCGCGCTCG CGGCGTTACGATTTCGGTCTGCGTGGCGAGTATTTAAATACCAAAAGGGCCTAAAAAAGCTGCCGCACTATTCGCTCGCA TTCGATCAATTGCGCGTCAGCAAGGAGCGGTTGTTTATCGGCAAGGGATTTGAGTGGGAACCCAAACACACGCAGCGAAT GCACGAATGCGAGCAGCCCGGTGCCGAGCGCTATATTAAACCCGGAAAATTCTACCAACTGGCGCGCTGGATTGATGGAC GTGCGGAGTACAGTAACGTCATGAGGTCGGTGAGCCGTCTGACGCGGAGCTCGTCGCGCTGGAACCCCGTCGCGCCGATT GCGGATGTAGGAGGCTATCCCGCCATTCACGGCGTGGGCCTGCTAGAACGCGAACGTGATGTGTACATGAAACTGTCCGA GCGCGTAGGTCATTTGCTTGTGCTTGGAACGACCCGTGTCGGCAAAACCCGCTTTGCTGAAATGCTGATCGCGCAGGATA TTGCACGGGGCGACGTAGTCATCGTCTTTGATCCGAAGGGCGACGCCGAGCTGATGAAACGGGTGTACCGAGAAGCGAAG CGTGCCGGTAGACTGGAGCAGCTTTATATCTTTCATCTGGGCTATCCGGAAGTTTCTGCACGTTACAATCCGGTAGGCCA GTTTACTAGGATCACGGAGGTGGCCTCACGCATTGCAGGCCAGATGCCGGGGGATGGTGCCTCACAAGCCTTCCGTGAGT TTGTCTGGCGCTACGTGAACGTCATTGCAGCGTGCCGTAACGCGCTCGGCGTGCGGCCGGGTATCGAGCAGATTAAATAC GACGCCGAAAACCTCGAACCGCTCGTCGTTGAGTATTTGGAATTTTTGCTTGAACGTGAGTGCCGGTCGGGGCCGTTGTC GAATTGGAAAAAAACCATTGACGATTGGGCGGCGGCATTCGACGACGCTCAAGAAAAGGAGTTTCGCAAACCGCGACACA TGGGCGACCGCAGCAGTCGTGCAATGGCGCTGTGCAAGTTTTACAAAGACCACAAAAATGATCATCGTTTGCACGATACC TGTGCGGAGTCGTTGATCACGACGTTTTTCTACGATACGGCAAAATTCAACATGCTCATTGCATCGCTGATGCCGCTCAT GGAAAAGTTATGCACGGGCAAATGCGCGGAGCTGATTAGCCCTGATTATTTAGATGGCGACCGACACCGCCCTATATTTA CATGGGCGGAAGTGATCCGCACTGGCGGCATCGTCTACGTGGGGCTGGACGCCTTGTCTGATCCGGAGGTGGCGGCGGCG GTAGGAAATTCAATGTTCGCGGATTTAACCTCGGGTTCTGGTCTGCTGTACAAACACGGTGCCGATCACGGTTTGCCGTT TTCCGTCGGCGGGCGGCGCGTCTATATCCATGCGGATGAATTTAACGAGCTGGTGGGCAAGGAGTTTATCCCGTTGTTGA ACAAGGCGGGGGGTGCGGGTTATGGCGTGACGGCGTACACGCAGACATGGTCAGATGTGGTTGCCCGCTTGGGTAACGAA GCTCAAGCAGGGCAAGTGGCGGGAAACTTAAACTCGCTGGTGATGTTGCGCACGATCGAATACGCGACGATCGAAATGCT GACAAAGCGGCTGCGGCAGGTGGACGTGGCCCATGCGATGGATGTATCGGGCGCCTCTGATGTGAGCGACCCAGATGCGA ATACGTCGTTCTCCTCACGAACAGAGCAGCGTGTGACGTCGCAGCGCGTGGAGCGTGTCCATCCAAACGACGTACTTCGG TTGCCCAAAGGCCAAGCGTTTGCGATGACAGATGGCGGCACGCTTTCAAAAATCCGGCTCCCATTACCTGACCCGGCAGA TTTGGCCGATTTACCTCGTACCTTGCAAGATATGTCGGACGATATGGCGAAGCATTACCGCTCTGACAAAAATTGGTATC ACTTTCAATCGTGCTTTGACGTACCGGGAGCGTTCAATGGCCTCAAATGA Protein sequence : MVSSRIEGLLRPPIEFASAIAYSAVAGLMMAAPYELMMTPTVAAATGSGLLALAALRFRSAWRVFKYQKGLKKLPHYSLA FDQLRVSKERLFIGKGFEWEPKHTQRMHECEQPGAERYIKPGKFYQLARWIDGRAEYSNVMRSVSRLTRSSSRWNPVAPI ADVGGYPAIHGVGLLERERDVYMKLSERVGHLLVLGTTRVGKTRFAEMLIAQDIARGDVVIVFDPKGDAELMKRVYREAK RAGRLEQLYIFHLGYPEVSARYNPVGQFTRITEVASRIAGQMPGDGASQAFREFVWRYVNVIAACRNALGVRPGIEQIKY DAENLEPLVVEYLEFLLERECRSGPLSNWKKTIDDWAAAFDDAQEKEFRKPRHMGDRSSRAMALCKFYKDHKNDHRLHDT CAESLITTFFYDTAKFNMLIASLMPLMEKLCTGKCAELISPDYLDGDRHRPIFTWAEVIRTGGIVYVGLDALSDPEVAAA VGNSMFADLTSGSGLLYKHGADHGLPFSVGGRRVYIHADEFNELVGKEFIPLLNKAGGAGYGVTAYTQTWSDVVARLGNE AQAGQVAGNLNSLVMLRTIEYATIEMLTKRLRQVDVAHAMDVSGASDVSDPDANTSFSSRTEQRVTSQRVERVHPNDVLR LPKGQAFAMTDGGTLSKIRLPLPDPADLADLPRTLQDMSDDMAKHYRSDKNWYHFQSCFDVPGAFNGLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 7e-120 | 48 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 5e-130 | 47 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 5e-130 | 47 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 1e-115 | 47 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 1e-120 | 46 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 8e-121 | 46 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 1e-126 | 46 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 3e-118 | 46 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 5e-125 | 46 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 1e-122 | 45 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 2e-119 | 45 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 2e-121 | 44 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 5e-122 | 44 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 3e-122 | 44 |
