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Name : gspF (HDN1F_34700) Accession : YP_003812685.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4216233 - 4217447 bp Length : 1215 bp Strand : + Note : silverDB:HdN1F4620 DNA sequence : GTGCCCGCCTATGAGTACGTCGTACTGGATACTGCTGGAAAGCAAAAAAAGGGCACCCTAGAGGGCGATAGTCCGCGCCA TGTGCGCCAACAGCTTAAAGAAAAGGGACTGATTCCGCTTACAGTCGAAGCTACCGCACAAAAAACGCGTCGCGATGAAA AAAGCGTCTTTCGGCGCGGTTCTATGGGCTCGGCAGATCTTGCCTTGGTCACCCGCCAACTGGCAACGCTGGTGCGCGCC GGCATTCCGATTGAGGGCGCGTTGCGGGCGGTTTCCAAACAAAGCGAAAAGCCAAAAGTGGCCAGCATCATGCTCGCGGT GCGCTCGCGCGTTGTTGAAGGCCACTCCTTGGAATCCGCACTCGCAGAGTTCCCGCAAGCCTTTCCTGACTTGTACCGAG CCACGATTGGCGCGGGCGAACATTCCGGCCACTTGGATTTAGTGCTAGAGCAGCTCTCTGACTACACCGAGTCGCGGCAT CGCACCCAGCGCACCATTCAGGGCGCAATGATCTACCCGATCGTGCTGACCGCTTTTGCGGTGCTGATCGTCGTTGGGAT GCTGATGTTTGTTGTCCCCAAGATTGTGACCGTGTTCGAAAGCTCCGGCCAACAGCTCCCAGCAATGACCCAAGTTTTGA TTGGGACAAGTGCATTTTTGCAGCATTGGTGGTGGGCCTTACTGTTGGTGATCGGCTTGTTTGTGTGGCTTTGGCGGCGC GCGATGCAAAAGCCGGCATTTCGCTATCGCGTGCACCGTCGTCTGTTGCAGTTGCCATTGATGGGTAAAATCGTACGCGG CATCGAGTCTGCCCGCGTGGTAGGCACGCTTGCGATACTCTCACGCAGCGGCGTTCCCTTGGTCGAAGCACTGCGAATTT CTTCCCAAGTGGCGGGAAACCTACCCATCCGCGAAGCAGTCTCAGAAGCAGCCACCAAGTTACGCGAAGGCTCCAGTTTG TTTACGTCGCTGGATCAGTGCGGCTACTTTCCGCCGATGATGATGCAGATGATTGCGAGCGGTGAGTCGAGCGGCGAACT GGATACCATGCTCACTCGCGCCGCACAAAACCAAGAGCGTGAACTGGAAGAGGTCATTGCAACCATCGTTGGCCTGTTTG AGCCGATCATGCTGGTTGTGATGGGAGGGGTTGTACTGATCATCGTTTTGTCGATAATGATGCCCGTTATCAGTATGAAT ACATTAGTAAAATAG Protein sequence : MPAYEYVVLDTAGKQKKGTLEGDSPRHVRQQLKEKGLIPLTVEATAQKTRRDEKSVFRRGSMGSADLALVTRQLATLVRA GIPIEGALRAVSKQSEKPKVASIMLAVRSRVVEGHSLESALAEFPQAFPDLYRATIGAGEHSGHLDLVLEQLSDYTESRH RTQRTIQGAMIYPIVLTAFAVLIVVGMLMFVVPKIVTVFESSGQQLPAMTQVLIGTSAFLQHWWWALLLVIGLFVWLWRR AMQKPAFRYRVHRRLLQLPLMGKIVRGIESARVVGTLAILSRSGVPLVEALRISSQVAGNLPIREAVSEAATKLREGSSL FTSLDQCGYFPPMMMQMIASGESSGELDTMLTRAAQNQERELEEVIATIVGLFEPIMLVVMGGVVLIIVLSIMMPVISMN TLVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 8e-61 | 44 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-60 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_003812685.1 | general secretion pathway protein F | VFG0181 | Protein | 2e-87 | 53 |
| gspF | YP_003812685.1 | general secretion pathway protein F | VFG2049 | Protein | 3e-60 | 44 |
| gspF | YP_003812685.1 | general secretion pathway protein F | VFG1870 | Protein | 4e-70 | 41 |
