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Name : gspE (HDN1F_34690) Accession : YP_003812684.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4214712 - 4216229 bp Length : 1518 bp Strand : + Note : silverDB:HdN1F4619 DNA sequence : ATGACTGCTCAATCTTCAGACGCCAATTCTGCCCCTGCTTTTGTTACTCGTAATCGCCGCCTGCCTTTCTCGTTTGCAAA AAGGCATGGAGTCGTTATAGAAGACATTGGCCAAGTCGACGCAATGGTGGCTTGCAAGACCGGCATGTCCATTCAGGCCA TTGCCGAAGTTCGGCGGTTCTTGGGGATGCCGATTCAGTTTAGTGAAGTCAGCGATACCGATTTTGAAAAGCGCCTCGCA CTGGCCTATCAGAACGACTCTAGCGACGCGATGCAGATGGTGGAGGGCTTGGGTGACGAGCTTGATCTCGCCAGCCTTGC GGATTCAGTCCCCGAAACGGAGGACCTGATGGAGCAGGAGGACGATGCCCCCATTATCCGCCTGATTAACGCCTTGTTGA CTGAAGCGGTGAAATTAAATGCATCGGATATCCACATCGAAACGTTCGAGCGGCGCCTTGTCGTGCGAATGCGCGTGGAT GGGGTGCTGCGTGAAATCGTGCAGCCCAAGCGCGCGCTTGCACCCTTGCTGGTATCACGTATCAAGGTAATGGCCAAGCT GGATATTGCCGAAAAGCGTGTTCCCCAAGACGGGCGCATCGGGCTAAAAGTGGGTGGCCGAGAAATTGACGTTCGTGTCT CCACCATGCCATCCAATGCCGGCGAGCGCGTCGTATTGCGTCTGCTCGATAAACAGGCAGGTCGCCTAGATCTCACCCAT TTGGGCATGAGCGATTACGACCTTGAGCGCATGAAAGGCGTAATTATCAAGCCGCACGGCATCATCCTCGTGACGGGCCC CACTGGCTCGGGTAAGACCACAACGCTTTACGCAGCGCTTACCCAAGTGAATGACGGCAGCCGGAACATCCTCACCGTAG AAGACCCAATCGAATATCAAATCGAAGGCATTGGTCAGACCCAAGTCAGCCCGAAAGTCGACATGACCTTTGCACGTGGG CTACGCGCAATGCTCCGCCAAGACCCAGACGTAGTCATGGTGGGGGAGATTCGCGACATTGAAACCGCCGAAATTGCTGT GCAGGCAAGCTTGACGGGTCACCTTGTGCTATCTACTTTACACACCAACACCGCCGTGGGCGCGGTAACGCGCTTGCGCG ACATGGGCATCGAACCTTTTCTGCTTTCTTCGTCACTACTCGGCGTATTAGCGCAGCGCTTGGTGCGCGTGCTCTGCGGC GACTGCAAAACGCCTTACGCGCCCAACGATTCCGAATGCGATCTATTCGATTTTCAGAAAGATCAGCGCCCCACTCTGTA TCGCCCAGCGGGCTGCGAAAAGTGCAACCACTTGGGCTATCGTGGCCGAACTGGGATATATGAACTGATTCTGTTGGACG ACGAGATGCGAACCATGGTGCACGCCGGTGCCAGCGAACAACAGATGATTGCAAGCGCTCGCAAACACTCGCCGGGGATT CGCGAAGACGGCAAGCGTAAAATATTGGCAGGCATCACGAGCGTTGAGGAAGTGCTACGCGTAACCAGAGAGGATTAA Protein sequence : MTAQSSDANSAPAFVTRNRRLPFSFAKRHGVVIEDIGQVDAMVACKTGMSIQAIAEVRRFLGMPIQFSEVSDTDFEKRLA LAYQNDSSDAMQMVEGLGDELDLASLADSVPETEDLMEQEDDAPIIRLINALLTEAVKLNASDIHIETFERRLVVRMRVD GVLREIVQPKRALAPLLVSRIKVMAKLDIAEKRVPQDGRIGLKVGGREIDVRVSTMPSNAGERVVLRLLDKQAGRLDLTH LGMSDYDLERMKGVIIKPHGIILVTGPTGSGKTTTLYAALTQVNDGSRNILTVEDPIEYQIEGIGQTQVSPKVDMTFARG LRAMLRQDPDVVMVGEIRDIETAEIAVQASLTGHLVLSTLHTNTAVGAVTRLRDMGIEPFLLSSSLLGVLAQRLVRVLCG DCKTPYAPNDSECDLFDFQKDQRPTLYRPAGCEKCNHLGYRGRTGIYELILLDDEMRTMVHAGASEQQMIASARKHSPGI REDGKRKILAGITSVEEVLRVTRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-141 | 62 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-141 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG0182 | Protein | 3e-167 | 69 |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-141 | 61 |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG1876 | Protein | 6e-144 | 59 |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG2426 | Protein | 5e-73 | 47 |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG1880 | Protein | 5e-79 | 44 |
| gspE | YP_003812684.1 | general secretion pathway protein E | VFG0112 | Protein | 5e-82 | 43 |
