Gene Information

Name : pilR (HDN1F_03350)
Accession : YP_003809584.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : Response regulator, type IV fimbriae
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 426392 - 427783 bp
Length : 1392 bp
Strand : -
Note : silverDB:HdN1F443

DNA sequence : 
ATGACAACGCCTAATGCACTAATCGTCGATGATGAACCGGATATTCGAGAGCTTTTGCAGTTAACTCTCTCAAGAATGGG
CATTCACTGCCATACGGCCGCGACGTTATCAGAGGCTCACACGCTGTTAGATACAGGCAGCTTCGATTTTTGTATTACCG
ACATGAACCTGCCGGATGGCAGCGGGATTGAACTAATCACCTATGTTCAGCAGCGCTTTCCAATGCTGCCGATTGCGGTT
TTAACCGCCTACGGCAGTATGGAAACGGCAGTTTTCGCACTGAAAGCGGGTGCTTTTGATTTTGTATCAAAGCCCGTAGA
GTTGCAGCGGCTGCGCGATTTGGTAACGAGCGCCCTAAAGTTAAGTGCGCCGAATAAACCCAAACTGGAAGGCAATGCAG
CTCACTCCCCAATTTTTGGCAAATCGGAGCGCATCAACAAGCTCCGCCAGCAGATCATTAAGCTTGCAAGAAGCCAAGCG
CCGCTTTACATCAGCGGGGAATCTGGAAGCGGAAAAGAACTCGTGGCGCGCCAGATTCACCTGTCAGGTTCACGCGCTGA
AGGGCCTTTCGTGCCAGTTAACTGCGGCGCGATTCCGAGTGAGTTGATGGAGAGTGAATTTTTTGGTCATAAAAAGGGCA
GCTTCACGGGCGCCTACGAAGACAAGCAAGGGCTGTTTCAGGCTGCGAAAGGCGGTACGCTGTTTCTCGATGAAGTGGCA
GATCTTCCATTAGCAATGCAGGTGAAACTACTGCGCGTCCTTCAGGAGAAAGCCGTTCGCCCCGTCGGTTCGATGAAGGA
AGTCGCGACGGATGTGCGCATTCTGAGCGCCACACATAAGGATCTTGGCGCACTGGTGGAACGCGGCGAGTTTCGGCAAG
ACCTTTTTTATCGTATTAACGTAATACAGGTGCAGGTTCCTTCCTTGCGCGAGAGGCAGGAGGATATCGCAATTCTGGCA
GATCACTTTCTTGCGGAACTTGCAGAGGAGTGGCAAATGACGCTCCCGAAGTTGAGCCCTGCAGCGATCCGCGCCCTAGA
AGGCTATAGTTTCCCAGGCAATGTTCGAGAGCTTGAAAACACCCTTGAACGCGCAGTAACGTTATGTGACAGCGGCACGA
TCCAACCGGAGCATTTACAGCTTCCGGAAAATGAAGCCGCAGGGCGCACAAGCATACCCCCCTCTTCTTCAAGCACCGAA
ATGCTGCCCAACTTTAGCGCAAATGGTGAAACGCTGGAAAATTATCTCGTTGATATTGAGAAGACCGCCATCCTGAAAGC
CTTAGACGATACCCGATGGAATCGAACCGCTGCCGCCAAAAAGCTCGGCATGAGTTTTCGCTCCTTGCGTTATCGCTTGA
AAAAATTGGGACTAGATACTGACGAAGACTAG

Protein sequence : 
MTTPNALIVDDEPDIRELLQLTLSRMGIHCHTAATLSEAHTLLDTGSFDFCITDMNLPDGSGIELITYVQQRFPMLPIAV
LTAYGSMETAVFALKAGAFDFVSKPVELQRLRDLVTSALKLSAPNKPKLEGNAAHSPIFGKSERINKLRQQIIKLARSQA
PLYISGESGSGKELVARQIHLSGSRAEGPFVPVNCGAIPSELMESEFFGHKKGSFTGAYEDKQGLFQAAKGGTLFLDEVA
DLPLAMQVKLLRVLQEKAVRPVGSMKEVATDVRILSATHKDLGALVERGEFRQDLFYRINVIQVQVPSLRERQEDIAILA
DHFLAELAEEWQMTLPKLSPAAIRALEGYSFPGNVRELENTLERAVTLCDSGTIQPEHLQLPENEAAGRTSIPPSSSSTE
MLPNFSANGETLENYLVDIEKTAILKALDDTRWNRTAAAKKLGMSFRSLRYRLKKLGLDTDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-114 52
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-114 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_003809584.1 Response regulator, type IV fimbriae BAC0467 Protein 5e-69 43
pilR YP_003809584.1 Response regulator, type IV fimbriae BAC0089 Protein 4e-75 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_003809584.1 Response regulator, type IV fimbriae VFG1214 Protein 8e-137 61