Gene Information

Name : HDN1F_29810 (HDN1F_29810)
Accession : YP_003812207.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Unknown
Product : transposase, IS66 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 3669462 - 3671042 bp
Length : 1581 bp
Strand : -
Note : silverDB:HdN1F4000

DNA sequence :
ATGAAAACCACTGAAAACACCACACTTCCAGACGATGTTGAACGCCTAAAGGCGTTGGTTTTGGCGTTGCAGAATAAAAA
TTCCGCCTTGCAAAAAGAAGCCGCAAAGGAAGCTGCAGAAGCGAAACGCTTCGAAAAACTGTACTACGAAACATGGGAGA
AGTGGCAGCTGGCTTTAAGAAGCCGCTTTGCTTCCAAAAGCGAAGCGTACGATGGGCAGGTGGATCTCTTTAACGAGATT
GAGCAAACGCTGGAGCCCACCGTCGAAGAAATTGCGGAAGCCGACGCAGAAAAGGAAACCATCACCTACACCCGTAAAAA
AGCTCGTGCACCGCGCATTGCCCCTGAGCTTCCCCGCGAAGATGTGCTGCACGATCTGGCCGATAAAGACAAAGTTTGCG
GCTGCTGTGGCCATGATCTGCACCGCATGGGCGAAGAAGTCAGCGAAAAGCTCGAATTTATTCCCGCACACGTGAAAGTG
CTACGTCACATCCGTCCCAAATACAGCTGCCGGCAGTGTGAACAGCAAGCCATTCGTACGGAGATCAAAATCGCGCCAGT
ACCAGCCAGCGTTTTACCCAAAAGCATCGCGTCTGCCAGTCTGCTTACACAAATCATTTGCGCCAAGTTTGTTTATGGTT
TGCCGCTTTATCGCCAGGAAGCCCTGTTTAAGAGCTTTGGGATTGAAATTAACCGTCAAACCATGAGTCGATGGCTCATT
AAAGTAAGCGAACAGCTCCGACCGCTTTACAAATACTTTCACCGAAGGCTGCTTGAACAGCCGGCGATCTGGTCGGACGA
TACCCGCATAAAAGTCATTGAGACCGACAATGCTCAATGCGCCATGTGGGTGTACGGATGTGGAATGGAAACGCCTTTGC
CTGGTGGCGCGCCACCGATTGTGCTGTACGATTATCGAGACGGCCGAGCGGGCCGCTATATCACCGACTTTTTGCAGGGC
TACAGCGGCCTTCTGCAAGTCGATGGCTATCAAGCGTACCAGCAAACCCACGCCACGTTAATTGGCTGCTGGGCACACGC
GCGACGTAAATTCAAAGAAGCCAAAGACGTGCAACCCAAAGGCAAAACAGGGCGTGCAGATGTGGCGCTCAGCTTGATCC
AAAAGCTCTATGCAATTGAGAAATCACTCCCAGAAAAAACCATCGAAGAACGCCTCGCAATTCGCCAGCAACAATCCGCA
CCGATCCTCCAGCAAATCAAAGAGTATCTGGAGAAAACCGCTTTCGAGGTGCCGCCCAAAACCGCCATCGGCCTTGCCGT
GCACTACAGCTTAAACCAATGGAACAAACTCACCGCCTACTTGGGCTACGGCGAGACCAGTATCGACAACAACCGCGCGG
AGCGCGCCATCAAACCCTTTGTGATCGGCCGCAAAAACTGGCTGTTCGCCAACACCCGCACCGGTGCCACTGCAAGCGCC
ATACTCTACAGTATCGTAGAAACCGCGAAAGCCAACGGCCTGAGACCTGAGCAATATCTACAAGCCTTGCTCGAACAACT
GCCCACCACCCAAGCAGAAGAGATCGAACTGCTGACGCCGTGGAATATTACGTTGAGTTAG

Protein sequence :
MKTTENTTLPDDVERLKALVLALQNKNSALQKEAAKEAAEAKRFEKLYYETWEKWQLALRSRFASKSEAYDGQVDLFNEI
EQTLEPTVEEIAEADAEKETITYTRKKARAPRIAPELPREDVLHDLADKDKVCGCCGHDLHRMGEEVSEKLEFIPAHVKV
LRHIRPKYSCRQCEQQAIRTEIKIAPVPASVLPKSIASASLLTQIICAKFVYGLPLYRQEALFKSFGIEINRQTMSRWLI
KVSEQLRPLYKYFHRRLLEQPAIWSDDTRIKVIETDNAQCAMWVYGCGMETPLPGGAPPIVLYDYRDGRAGRYITDFLQG
YSGLLQVDGYQAYQQTHATLIGCWAHARRKFKEAKDVQPKGKTGRADVALSLIQKLYAIEKSLPEKTIEERLAIRQQQSA
PILQQIKEYLEKTAFEVPPKTAIGLAVHYSLNQWNKLTAYLGYGETSIDNNRAERAIKPFVIGRKNWLFANTRTGATASA
ILYSIVETAKANGLRPEQYLQALLEQLPTTQAEEIELLTPWNITLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF71494.1 unknown Not tested Hrp PAI Protein 4e-78 41