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Name : HDN1F_29610 (HDN1F_29610) Accession : YP_003812187.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : Integron integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 3653190 - 3654194 bp Length : 1005 bp Strand : - Note : silverDB:HdN1F3984 DNA sequence : ATGCGTCGTGCTCGACAGCAACTAGCCGATGTTCCAATTGAGTTACCTGCCAACCCCACACGATTCACCGACCAGCTGCG CACCTTTATCCGCGCACGGAACTTGTCTTATAGCACCGAAAAAACCTACGTACACTGGGTGCTGCGATTTATACGTTTTC ACCACAAGCGCCACCCAAAAGACATGGCAGACAAGGAGGTTGATGAGTTTTTGTCACATTTGGCCGTGAGCCTTCACTGC AGTCCAGCAACGCAAAAAGTCGCCCTAAACGCGCTCATATTCCTCTACCGAGAGTTTCTAAAGCTTCCTTTGAGCGGGCT GGGTTTTAGCCGCGCTCGTAAGCCAAGCCGAATACCCACCGTATTCAGCCACCAAGAGGCGATGGATATTATTGGCAGAC TAAGCGGAACCCATCAGTTGGTAGTACAGCTGATTTACGGCACGGGAATGAGAATTAACGAAGTACTTCGGCTGCGAATA AAAGATGTGGATTTTTCCATGCAGCAAATCATCGTGCGCGCAGGAAAAGGGGATAAAGATCGCGTAACCTTGCTGCCAGA TCGCTTGATTTCCCCGCTGAAGCAGCAAATAGATGTCGCCCTTGCTGTCCATCGGCAAGATTTATCGCAAGGCTTTGGTG ATGTATATATGCCCAACGCGCTGGCAAAAAAATACAATGCCAAAGCGCCGGAATGGCAGTATGTCTTTGCCGCCGCACAA ATGTCGGTAGACCCAAGGTCGGAAAACCAAATACGTCGCAGGCATCACATCCTTGATCGTGGCGTACAAAAAGCCGTAGC GCACGCAATGCAACAGGCAAAGGTGTATAAAAAGGGAAATACGCATACCTTCCGTCATAGCTTTGCTACACGCCTACTTG AAGTAGGATACGATATTCGCACGATCCAAAAATTACTTGGGCACGCGGATGTAAAAACCACCGAAATCTACACCCACGTA GTCAAGCGGGGTGGTTTTGGAGTACGCAGTCCATTAGACCTTTAG Protein sequence : MRRARQQLADVPIELPANPTRFTDQLRTFIRARNLSYSTEKTYVHWVLRFIRFHHKRHPKDMADKEVDEFLSHLAVSLHC SPATQKVALNALIFLYREFLKLPLSGLGFSRARKPSRIPTVFSHQEAMDIIGRLSGTHQLVVQLIYGTGMRINEVLRLRI KDVDFSMQQIIVRAGKGDKDRVTLLPDRLISPLKQQIDVALAVHRQDLSQGFGDVYMPNALAKKYNAKAPEWQYVFAAAQ MSVDPRSENQIRRRHHILDRGVQKAVAHAMQQAKVYKKGNTHTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHV VKRGGFGVRSPLDL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| intI1 | AFL65913.1 | class 1 integrase | Not tested | SGI1-J6 | Protein | 2e-49 | 49 |
| intI1 | ACY75520.1 | integrase | Not tested | Tn6060 | Protein | 8e-63 | 49 |
| intI1 | AFV53119.1 | IntI1 integrase | Not tested | AbGRI2-1 | Protein | 2e-62 | 49 |
| intI1 | ACY75535.1 | integrase | Not tested | Tn6060 | Protein | 8e-63 | 49 |
| intI1 | AGK36642.1 | IntI1 integrase | Not tested | AbaR26 | Protein | 2e-62 | 49 |
| intI1 | ABB48427.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| intI1 | AGF34986.1 | IntI1 integrase | Not tested | SGI1 | Protein | 8e-63 | 49 |
| unnamed | AAL08437.1 | Tn21 integrase IntI1 | Not tested | SRL | Protein | 1e-62 | 49 |
| intI | CAJ77082.1 | Integrase | Not tested | AbaR1 | Protein | 2e-62 | 49 |
| intI1 | AGF35026.1 | IntI1 integrase | Not tested | SGI1 | Protein | 8e-63 | 49 |
| unnamed | ACF06155.1 | class 1 integrase | Not tested | Tn5036-like | Protein | 8e-63 | 49 |
| intI1 | AGF35060.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| intI | YP_001844881.1 | integrase | Not tested | AbaR20 | Protein | 3e-62 | 49 |
| intI1 | CAB46685.1 | DNA integrase | Not tested | Not named | Protein | 8e-63 | 49 |
| intI1 | AGK07098.1 | IntI1 integrase | Not tested | SGI1 | Protein | 8e-63 | 49 |
| intI1 | AGK06930.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| intI1 | YP_005797130.1 | integrase | Not tested | AbaR4e | Protein | 3e-62 | 49 |
| intI1 | AAK02045.1 | integrase | Not tested | SGI1 | Protein | 8e-63 | 49 |
| intI1 | AGK06967.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| intI1 | YP_005797145.1 | integrase | Not tested | AbaR4e | Protein | 3e-62 | 49 |
| intI1 | ABZ01842.1 | IntI1 | Not tested | SGI2 | Protein | 8e-63 | 49 |
| intI1 | AGK07013.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| intI1 | ACN81019.1 | IntI1 integrase | Not tested | AbaR5 | Protein | 3e-62 | 49 |
| intI | CAJ77028.1 | Integrase | Not tested | AbaR1 | Protein | 8e-63 | 49 |
| intI1 | AGK07071.1 | IntI1 integrase | Not tested | SGI1 | Protein | 2e-62 | 49 |
| EC042_4092 | YP_006098375.1 | integrase | Not tested | Tn2411 | Protein | 1e-62 | 49 |
| int1 | YP_005160012.1 | integrase | Not tested | Not named | Protein | 1e-52 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HDN1F_29610 | YP_003812187.1 | Integron integrase | VFG1028 | Protein | 6e-63 | 49 |
