|
Name : gabD (HDN1F_25790) Accession : YP_003811805.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 3173408 - 3174865 bp Length : 1458 bp Strand : - Note : silverDB:HdN1F3444 DNA sequence : ATGCCTTCCTCACTCAAACGCCCCGATTTATGCCGCTCACAAATTTTTATTAACGGCCAATGGTGCAACGCCGACAGCCT CGCCACGGCCAACGTAACCAATCCCGCCACCGGCGAAACCATCACCACCGTACCGCGTGCGGGGCAAGCGGAAACCGAAC GCGCAATCTCAGCGGCAAATAACGCTCTACCGAACTGGCGTGCCCGCACTGCAAAAGAGCGCTCGCAGCTACTCAAACGC TGGTATCAGCTCATGCTGGACCACCAAGAAGATCTCGCCACGCTCTTGACCCTCGAACAAGGCAAACCACTTGCCGAAGC ACGCGGTGAAATTCTCTACGGCGCCTCCTTCATTGAATGGTTTGCCGAAGAAGCCAAACGCGCCTACGGCGACATCATCC CAGGCTTTAGCGCTGATCGGCGGCTTCTTGTCTACAAACAGCCCATTGGCGTAGTGGCCGCGATCACGCCATGGAACTTT CCCAATGCAATGATCACCCGCAAGCTTGGCCCCGCCCTTGCTGCCGGCTGCACCGTGGTACTCAAGCCCGCCTCCGACAC TCCGTTAAGCGCGCTAGCTCTCGCCGCACTAGCCGAAGAAGCGGGCATCCCTGCAGGCGTAATCAACGTAATCACCGGCC CCGCATCTGCCATCGGCCCCGTGCTCACTCACAGCCCCATCGTTCGCAAAATCTCCTTTACGGGCTCCACCGAGGTAGGC CGCCAACTGATGGCAGAATCCTCCGGCACCCTCAAAAAGCTCTCGTTGGAACTCGGCGGCAATGCGCCCTTTATCGTTTT TGACGATGCCGACTTAGACGCCGCCGTACAGGGTTTAATGGCCTCCAAGTTTCGCAACTCCGGGCAAACCTGCGTATGCA CCAACCGCGTACTGGTGCAAGCCTCGGTACATGATCGGTTTGTCGAAAAGCTCAACAAAGCCGTTCAATCGCTCAAAGTT GGCAACGGCCTGCATGAAGGCGTCAACCAAGGTCCGCTGATCAACCCTGCGGCACTCTCCCACGCGGAACACTTACTGGC AACCCTCCCCGCAGGTGCCCAAGTCGTCACCGGCGGCAAGCGCCACGCCTTGGGCGGCACCTTTTTCGAACCGACGATCG TAACCGGCATCCGCAACGATCACGCACTTGCACAACAAGAGCAGTTTGCCCCCATCACCCCAGTCATCCGCTTTGAAACC GAAGAAGAGGCCATCGCGCTTGCCAACGCCACCGAGTACGGCCTTGCTTCCTACTTTTACAGCCGCGACCTCAACCGCAT GTTCCGCGTCTCTGAGGCGCTGGAATACGGCATGGTTGGCGTAAACGAAGGCATCGTATCCACCGAAGTCGCACCCTTCG GCGGAGTGAAAGCCTCCGGCCTTGGCCGCGAAGGTTCGAAATACGGCATCGACGAATACCTTGAAATCAAATATGTGTGC ATCGGTGGAGTACGCTAA Protein sequence : MPSSLKRPDLCRSQIFINGQWCNADSLATANVTNPATGETITTVPRAGQAETERAISAANNALPNWRARTAKERSQLLKR WYQLMLDHQEDLATLLTLEQGKPLAEARGEILYGASFIEWFAEEAKRAYGDIIPGFSADRRLLVYKQPIGVVAAITPWNF PNAMITRKLGPALAAGCTVVLKPASDTPLSALALAALAEEAGIPAGVINVITGPASAIGPVLTHSPIVRKISFTGSTEVG RQLMAESSGTLKKLSLELGGNAPFIVFDDADLDAAVQGLMASKFRNSGQTCVCTNRVLVQASVHDRFVEKLNKAVQSLKV GNGLHEGVNQGPLINPAALSHAEHLLATLPAGAQVVTGGKRHALGGTFFEPTIVTGIRNDHALAQQEQFAPITPVIRFET EEEAIALANATEYGLASYFYSRDLNRMFRVSEALEYGMVGVNEGIVSTEVAPFGGVKASGLGREGSKYGIDEYLEIKYVC IGGVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-152 | 65 |
