Gene Information

Name : HDN1F_25040 (HDN1F_25040)
Accession : YP_003811730.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : thiol peroxidase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : -
Position : 3087564 - 3088064 bp
Length : 501 bp
Strand : +
Note : silverDB:HdN1F3339

DNA sequence : 
ATGTCTACTGTTACGTTTCGTGGGACTCCACTTGAGGTTTCCGGCAGCATACCGAAAGCAGGTCAGGCTGCGCCGGCGTT
TACGCTTACTGGAAAAGATCTTAATGATCTTGGTTTGAATGATTTTAAAGGCAAAAAGCTGCTGCTCAATATTTTTCCGA
GCATTGATACCGGGGTTTGCGCAACGAGTGTGCGGACATTTAACCAACGTGCAGCGGAGTTGAATAACGCGCAGGTTTTG
TGTGTTTCTGCGGATTTGCCGTTTGCGGCAGGGCGTTTCTGTACGGCCGAAGGGATTGATAAAGTGCAAACGGTATCCAC
CTTTCGTCACTCGGAGTTTTTGAAAACCTACGGCGTGGCGTTAAACACAGGGCCGTTGCGCGGTTTGGCGGCGCGTGCGG
TGGTGTGTATAGATGAAGATGGCAAGGTGGTGCATAGTGAGCTGGTGCCAGAAATTGGCCAAGAGCCCAACTACGATGCC
GCTTTGGCTGCGCTGCAGTAG

Protein sequence : 
MSTVTFRGTPLEVSGSIPKAGQAAPAFTLTGKDLNDLGLNDFKGKKLLLNIFPSIDTGVCATSVRTFNQRAAELNNAQVL
CVSADLPFAAGRFCTAEGIDKVQTVSTFRHSEFLKTYGVALNTGPLRGLAARAVVCIDEDGKVVHSELVPEIGQEPNYDA
ALAALQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 3e-39 54
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-39 54
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 2e-39 54
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 1e-39 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_25040 YP_003811730.1 thiol peroxidase VFG0087 Protein 6e-40 54