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Name : dnaB (HDN1F_24010) Accession : YP_003811627.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : Replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 2963193 - 2964587 bp Length : 1395 bp Strand : + Note : silverDB:HdN1F3190 DNA sequence : ATGTCAGATAGCCAGGATGATTTGGCAGCATTGCCGGATCCAGACGCTCATGGTCTGAAAGTTCCACCGCATTCCTTAGA AGCTGAGCAGGCGGTGATCGGCGGGTTGATGCTAGATAACCAAGCCTTTGACGATGTGTCGGAACTGGTGGCCGAGGTTG ATTTTTATCGGCGCGAACACCGCTTGATCTTTCGAGCAATTGCCCAGCTTAGCCAAGAAAACCACCCGTTCGACGTCATT ACGCTGGGCGAAGCACTGGTAAAATCGGCTGCCCTCGAAGATGCTGGCGGCATGAAATATCTGGCAGAGGTGGCCCGCAA CACGCCAAGTGCGAGCAATATCCGTGCGTATGCGGCCATTGTGCGAGAGCGTTCCGTTCTGCGGCAAATGGTGCGGGTTG CGAATGAGATTGCGGAGAGCGCTTTTAACCCCAAGGGGCGCTCCGCATCCGAATTATTGGATGAGGCAGAGCGCAAGGTG TTCGCCATTGCCGAGCAAGGGCGTAAAGCGGGTGGGCCGAGGGACATTAAATCGGTACTGAAGGACACCGTTAACCGAAT TGACAAACTGTTTTCCAGCGACGAGGCCATTACAGGGGTTGCGACGGGATTTACTGACCTCGATAACATGACCTCGGGCT TGCAGCCTGCCGATCTTGTCATTGTTGCGGCGCGGCCGTCGATGGGCAAAACCACCTTTGCGATGAACCTTTCGGAAAAC GTGTTGATACGATCAGGTAAGCCGGTGCTGGTTTTTTCGATGGAAATGCCTGCAGAATCCATCGTGATGCGTATGCTTTC TTCGCTTGGGCGTATTGACCAAACGCGCGTGCGTAGTGGCAAGCTGGAGGAAGACGATTGGCCACGCTTCAACTCTGCGG TGAGCATGCTCGCGGAACAAAAGCTATTTATTGACGATTCAGCGGGTTTGTCGCCCAGCGAATTACGCGCCCGTGCGCGG CGCGTGGTGCGGGATCACGGGCCACTTGCGTTGATTATGGTGGACTATTTGCAGCTTATGAAAGTGCCTGGAGCTGAGAA CCGCGTTTCGGAAATTTCGGAGATTTCGCGCTCGCTGAAAGCACTTGCGAAAGAAATGGATTGCCCAGTAGTCGCTCTTT CCCAGCTAAACCGGGGTTTGGAACAGCGGCCGAACAAGCGCCCCATTAACTCGGATTTGCGGGAATCTGGAGCGATCGAG CAGGATGCCGACATCATCATGTTCATTTATCGTGATGAAGTGTATAACGAGGGCTCTGACGATAAAGGCATCGCAGAGAT TATTATCGGAAAGCAGCGTAACGGCCCGATTGGGACCGTTCGGCTTGCATTCCAAGGGCGCTTCACGCGCTTTGATGATT TAGCACATGATAGCTATCGCGGAGACGCATACTAA Protein sequence : MSDSQDDLAALPDPDAHGLKVPPHSLEAEQAVIGGLMLDNQAFDDVSELVAEVDFYRREHRLIFRAIAQLSQENHPFDVI TLGEALVKSAALEDAGGMKYLAEVARNTPSASNIRAYAAIVRERSVLRQMVRVANEIAESAFNPKGRSASELLDEAERKV FAIAEQGRKAGGPRDIKSVLKDTVNRIDKLFSSDEAITGVATGFTDLDNMTSGLQPADLVIVAARPSMGKTTFAMNLSEN VLIRSGKPVLVFSMEMPAESIVMRMLSSLGRIDQTRVRSGKLEEDDWPRFNSAVSMLAEQKLFIDDSAGLSPSELRARAR RVVRDHGPLALIMVDYLQLMKVPGAENRVSEISEISRSLKALAKEMDCPVVALSQLNRGLEQRPNKRPINSDLRESGAIE QDADIIMFIYRDEVYNEGSDDKGIAEIIIGKQRNGPIGTVRLAFQGRFTRFDDLAHDSYRGDAY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 1e-115 | 55 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 3e-103 | 52 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 8e-103 | 52 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-104 | 51 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 6e-104 | 51 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 8e-103 | 49 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 4e-99 | 48 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 4e-99 | 48 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 7e-84 | 44 |
