Gene Information

Name : phoB (HDN1F_22650)
Accession : YP_003811492.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : phosphatase regulon transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2799482 - 2800168 bp
Length : 687 bp
Strand : -
Note : silverDB:HdN1F3011

DNA sequence : 
ATGAAAGCCAACATTTTAATCGTCGATGACGAAATCGCAATTTGCGAACTTCTGACTCTCGCCCTAGAACAAGCAGGCTT
CACCGTGCAAGCCGCGTACGATGGTAAAGAAGCCTGGATAAAACTCGCAGAACAGGCGCCTGATTTGCTTCTGCTTGACT
GGATGCTTCCCGGAACGAGCGGCATTGAACTTGCTAGACGCATCCGTCAAACCGACAATCTCCGCACACTTCCCATCATC
ATGCTCAGCGCAAAAAGCGAAGAGGACAATAAAATCACCGGCCTTGAAATTGGTGCCGACGATTACATTACTAAGCCCTT
CTCAACACGTGAACTCATCTCCCGCATAAAAGCCTTGTTGCGCCGCCGAGCTCCAGACCGCCTAGAACAGCAACTCGTCC
ACGGTGAGCTCACACTCGACGTAATAAGCCAGCGCGTGCACACCAAAAGCGGCGAGATTTCTCTTGGCCCTATTGAGTTC
AAACTTTTGGAATTTTTTTTACGCAACCCCAACCGTGTTTTTAGCCGCGAGCAATTATTAAATCGTGTATGGGGCAGCAC
GGTGTATATCGAAGATCGCACTGTCGACGTTCACATCTTACGGCTGCGAAAATCCCTAAACAAAGCCGAGCTTCCTCCGA
TGATCGAAACCGTGCGCGGCAGCGGCTACAGGCTCAGCCCCGCATGA

Protein sequence : 
MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTSGIELARRIRQTDNLRTLPII
MLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALLRRRAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEF
KLLEFFLRNPNRVFSREQLLNRVWGSTVYIEDRTVDVHILRLRKSLNKAELPPMIETVRGSGYRLSPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-35 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_003923.1003749.p0 Protein 6e-40 43
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_003923.1003417.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_013450.8614146.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein AE015929.1.gene1106. Protein 1e-28 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002951.3238224.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_007793.3914065.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002758.1121390.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_010079.5776364.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002952.2859858.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_007622.3794948.p0 Protein 1e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_014475.1.orf0.gen Protein 5e-34 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_005054.2598277.p0 Protein 5e-34 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_012469.1.7686381. Protein 7e-33 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein AE016830.1.gene1681. Protein 2e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein HE999704.1.gene2815. Protein 1e-37 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein AE000516.2.gene3505. Protein 2e-36 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein CP001918.1.gene3444. Protein 2e-33 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002952.2859905.p0 Protein 4e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_007622.3794472.p0 Protein 4e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002745.1124361.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_009782.5559369.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002951.3237708.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002758.1121668.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_009641.5332272.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_013450.8614421.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_007793.3914279.p0 Protein 7e-40 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_012469.1.7685629. Protein 2e-36 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein BAC0596 Protein 2e-32 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein CP000034.1.gene2186. Protein 3e-33 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein NC_002695.1.916589.p Protein 3e-33 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein CP001138.1.gene2239. Protein 2e-32 41
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein BAC0039 Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein VFG1563 Protein 1e-35 42
phoB YP_003811492.1 phosphatase regulon transcriptional regulatory protein VFG1702 Protein 4e-36 42