Gene Information

Name : hscR (HDN1F_20230)
Accession : YP_003811251.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : type III secretory pathway protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2516103 - 2516768 bp
Length : 666 bp
Strand : -
Note : silverDB:HdN1F2667

DNA sequence : 
ATGGACTTTAACACCTTAAATCCTGGAACGATTATTGTGATCGTCGTTACGATCACAATGGCTCCTTTTGTTGCCGTTAT
GGTTACAGCGTTCACTAAGCTGGTCGTTGTGCTGAGTCTCCTCAGAAACTCCCTAGGGCTTCAACAAACTCCGCCTAACG
TTGTGCTTAACGGCCTTGCAATTATTCTTTCGCTTTACGTAATGTATCCGGTGCTTCTTCAGACTCAGTCATTGATCACG
TCACACTTAAAAGAAACTCCAGAAGCAAAGCTTACAGTCGATCGGCTAATTGAAATATTTGATGTTGGTAAGAAGCCACT
CAAGGATTTTTTAATTCGGCATTCTAAAGAATCTGAACGGCATTTTTTCCTCGAAAGCGCCCGACAGCTTCTTCCAGAAG
AGGATCGCAACAACATCCATGAAGACGATTTTCTTGTCATTGTTCCTGCATTTACCGTTAGCGAGCTTAGCGCTGCTTTT
CAGATCGGGTTTTTACTTTTTCTTCCGTTTTTGATTATTGATTTGCTTGTTAGCAATCTGCTAATGGCCTTGGGTATTGC
AATGCTCTCTCCAACTCAGGTTTCTTTGCCGTTCAAATTGCTCTTGTTTGTCTTTATTAGCGGGTGGACACAGCTAATAC
ATGGGCTTGTGCTTACCTATAACTAA

Protein sequence : 
MDFNTLNPGTIIVIVVTITMAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLIT
SHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNIHEDDFLVIVPAFTVSELSAAF
QIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQVSLPFKLLLFVFISGWTQLIHGLVLTYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-30 52
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 49
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-31 48
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-31 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 48
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-30 47
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 47
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-21 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 8e-21 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 8e-21 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-21 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-20 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-20 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-20 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-21 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-16 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-16 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-15 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hscR YP_003811251.1 type III secretory pathway protein VFG0188 Protein 3e-33 52
hscR YP_003811251.1 type III secretory pathway protein VFG0394 Protein 8e-30 50
hscR YP_003811251.1 type III secretory pathway protein VFG0044 Protein 2e-33 50
hscR YP_003811251.1 type III secretory pathway protein VFG0519 Protein 7e-22 43
hscR YP_003811251.1 type III secretory pathway protein VFG1259 Protein 7e-18 41