Gene Information

Name : hscS (HDN1F_20220)
Accession : YP_003811250.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : type III secretory pathway protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 2515780 - 2516049 bp
Length : 270 bp
Strand : -
Note : silverDB:HdN1F2665

DNA sequence :
ATGGACTATGCAGTAATACAGCTAACACAAGAGGCTTTATGGCTTCTCCTAATGCTCTCTGCGCCGATCATCCTAGGAGC
CGCCGCTTCTGGGCTTGTTATCGCGTTTCTTCAAGCAGTCACACAGCTTCAAGAACAAACGCTTGGGTTTGCAGTGAAGC
TAGTAGTTGTTTCTGCGCTCATTTTTTTAACCTCTGGCTTGGTCGGCGAAACGCTATTTCAATACGCCTCGCGGATTTTC
ACGAGCTTTCCAGCGCTGGTGGGGCCATGA

Protein sequence :
MDYAVIQLTQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLTSGLVGETLFQYASRIF
TSFPALVGP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 2e-07 49
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 4e-07 49
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 3e-07 46
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 5e-05 45
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 5e-05 45
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 1e-05 45
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 5e-05 45
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-06 44
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-06 44
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-06 44
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 1e-06 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 1e-11 42
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 9e-08 41
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-09 41
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hscS YP_003811250.1 type III secretory pathway protein VFG0187 Protein 7e-07 44
hscS YP_003811250.1 type III secretory pathway protein VFG0550 Protein 4e-07 44
hscS YP_003811250.1 type III secretory pathway protein VFG2132 Protein 1e-07 43