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Name : hscS (HDN1F_20220) Accession : YP_003811250.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Virulence Product : type III secretory pathway protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 2515780 - 2516049 bp Length : 270 bp Strand : - Note : silverDB:HdN1F2665 DNA sequence : ATGGACTATGCAGTAATACAGCTAACACAAGAGGCTTTATGGCTTCTCCTAATGCTCTCTGCGCCGATCATCCTAGGAGC CGCCGCTTCTGGGCTTGTTATCGCGTTTCTTCAAGCAGTCACACAGCTTCAAGAACAAACGCTTGGGTTTGCAGTGAAGC TAGTAGTTGTTTCTGCGCTCATTTTTTTAACCTCTGGCTTGGTCGGCGAAACGCTATTTCAATACGCCTCGCGGATTTTC ACGAGCTTTCCAGCGCTGGTGGGGCCATGA Protein sequence : MDYAVIQLTQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLTSGLVGETLFQYASRIF TSFPALVGP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECs3724 | NP_311751.1 | EpaQ | Not tested | LIM | Protein | 4e-07 | 49 |
| epaQ | AAZ31292.1 | EpaQ | Virulence | ETT2 | Protein | 2e-07 | 49 |
| spaQ | AAS66866.1 | SpaQ | Not tested | SSR-2 | Protein | 3e-07 | 46 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 5e-05 | 45 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 5e-05 | 45 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 5e-05 | 45 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 1e-05 | 45 |
| spaQ | NP_461810.1 | needle complex export protein | Virulence | SPI-1 | Protein | 1e-06 | 44 |
| spaQ | YP_217808.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 1e-06 | 44 |
| spaQ | NP_457283.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-06 | 44 |
| spaQ | NP_806492.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 1e-06 | 44 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 1e-11 | 42 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 9e-08 | 41 |
| escS | AFO66341.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-09 | 41 |
| escS | AFO66401.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-09 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hscS | YP_003811250.1 | type III secretory pathway protein | VFG0187 | Protein | 7e-07 | 44 |
| hscS | YP_003811250.1 | type III secretory pathway protein | VFG0550 | Protein | 4e-07 | 44 |
| hscS | YP_003811250.1 | type III secretory pathway protein | VFG2132 | Protein | 1e-07 | 43 |
