Gene Information

Name : tnpR (HDN1F_17960)
Accession : YP_003811027.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : TnpR recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 2250292 - 2250912 bp
Length : 621 bp
Strand : -
Note : silverDB:HdN1F2381

DNA sequence : 
TTGAAAGGTCATCGCATCGGCTATATCCGCGTCAGCAGCTTCGACCAGAATCCAGAGCGGCAATTGGAGGGCGCTTTGGT
CGATCGTGTGTTTACCGACAAGGCATCCGGCAAAGACACCCATCGCCCCCAGCTCAATGCGCTTCAAGAATTTGTGCGCG
AAGGGGATACGGTAGTCGTGCACAGCATGGATCGCCTTGCGCGCAACCTTGATGACCTGCGCCATCTTGTTCACGGTTTT
ACCCAACGTGGAATACGGGTTGAATTCGTCAAAGAGCACTTGGCCTTCACCGGTGAAGACTCGCCCATGGCGAATCTGAT
GCTTTCGGTCATGGGTGCTTTTGCCGAGTTTGAACGAGCGCTGATTCGGGAACGTCAGCGCGAGGGAATTGCGCTGGCCA
AGCAACGTGGCGCCTATAAAGGAAGGAAAAAATCGCTGGATGCTGCGCAGGCCTCGACGCTTTTGCAGCGCTTGGCGAAC
GGTGAGCAAAAAACAGCACTGGCCCGCGAGTTTGGCATCAGTCGGGAGACGCTTTATCAGTATTTGAGGGTGGGTCAGGC
TGAGAGGCCAACGAGAGGGATGCCAAGCAATAAAAGCGGTTATTCTAGCGGTTTGTTATAA

Protein sequence : 
MKGHRIGYIRVSSFDQNPERQLEGALVDRVFTDKASGKDTHRPQLNALQEFVREGDTVVVHSMDRLARNLDDLRHLVHGF
TQRGIRVEFVKEHLAFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYKGRKKSLDAAQASTLLQRLAN
GEQKTALAREFGISRETLYQYLRVGQAERPTRGMPSNKSGYSSGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 3e-68 81
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 7e-70 80
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 5e-70 80
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 5e-70 80
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 1e-68 80
res YP_005124341.1 DNA-invertase Not tested Not named Protein 5e-30 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpR YP_003811027.1 TnpR recombinase VFG1030 Protein 2e-70 80