Gene Information

Name : HDN1F_17790 (HDN1F_17790)
Accession : YP_003811011.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 2234911 - 2235411 bp
Length : 501 bp
Strand : +
Note : silverDB:HdN1F2353

DNA sequence : 
ATGAACCAAGAGCTGATCTGGGCGGCGGCAAATGATGTGCTTGACCTAGATTCGCTGAGTGAGCATCAAGAATCGGTGCT
CGTGGATGTAGCCTGCCTGCTGCTTACGCGGCGTTTTAAGCAACAGCCGACCTTAATTGAATCACCTTCAGCCGCAACAC
GCTTAGCAAAAACGTGGCTGGGGCTTGAGCCCAATGAGGTGTTTGGCGTGATCTATCTCGATGCGGGCCATTGCGTGATT
GAGATGGTCAAGCATTTTCATGGGACGGTAGACTCCTCCCATGTTCACGCGCGTCCCATCATGCAAAAGGCGTTAGAGAT
TAACGCAGTTGCAGTGATTTTTTGCCACAACCATCCCTCGGGGAGAGCTGAACCCAGCGCATCTGACAAGGCGATCACAA
ATCACCTAATTACGGTGCTCAAGTACGTCGATGTGCGCGTGCTGGATCATCTCGTTGTCGGTGAAACGGTCGCCTCAATG
GCCGGTCTTGGCATGATGTAG

Protein sequence : 
MNQELIWAAANDVLDLDSLSEHQESVLVDVACLLLTRRFKQQPTLIESPSAATRLAKTWLGLEPNEVFGVIYLDAGHCVI
EMVKHFHGTVDSSHVHARPIMQKALEINAVAVIFCHNHPSGRAEPSASDKAITNHLITVLKYVDVRVLDHLVVGETVASM
AGLGMM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-19 43
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-19 43
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-19 43
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_17790 YP_003811011.1 DNA repair protein VFG1119 Protein 5e-20 43