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Name : serS (HDN1F_15790) Accession : YP_003810814.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 2007534 - 2008817 bp Length : 1284 bp Strand : + Note : silverDB:HdN1F2093 DNA sequence : ATGTTGGACCCTAAGATCATTCGCGGGCAGTTGGATTTTGTGGCGGAACGCTTAGCATTGCGAGGCATGACTCTGGATAC CGGGCTTCTGACTTCGCTGGAAGAGCAACGTAAGGGCCTTCAGGTGCAGACGGAACAGTTGCAGAGTGAGCGTAACGCGC GCTCTAAGGCCATCGGGAAAGCTAAGGCGCAAGGGCAGGACACAAGCGTGCTATTAGCGGAAGTGGATACGCTCGGTGAC CAGTTGAGTCAATGTGAGAACCAGTTGAAAGAACTGATGGTGCGGTTGCAGGATGTTTATTACGGCCTGCCGAATCTACC TCATGAATCGGTGCCGAAGGGCGCAAGCGAAGAAGATAACGTAGAGGTGCGTCGCTGGGGGGCGCCGCGCGAGTTTGATT TTGAGCCACGTGACCATGTGGATATCGGTGAAGCGCTAGGCGAACTGGATTTTGAAGTTGCTGCCAAAATAACAGGCGCA CGTTTTGTGGTGATGAATGGCGCGTTAGCGCGGATGCATCGCGCCTTGATTCAGTTCATGCTGGATACGCATACTTCGCA AAATGGCTATCAGGAAGTCTATGTACCTTATGTTGTGAACGAAGATTCGCTCAAAGGTACGGGGCAGCTGCCGAAGTTTG GTCAGGAGTTGTATCGGCTTGAGGGGGAAAAGGCGTTTTATCTGATCCCGACTGCTGAGGTGCCCGTTACCAATTTAATG CGCGATGAAATTGTGGCGGAAGATGAGCTGCCGAAAAAGTTTGCCTGCCATACGCCCTGTTTTCGCAGCGAAGCGGGCGC TTACGGGAAAGACGTGCGCGGCATGATACGTCAGCATCAGTTTGAGAAGATCGAGCTCGTTCAAATTGTGCGCCCAGAAG ATTCTTATGCTGCTTTGGAAGCATTGACAGGGCACGCAGAGTCGATTTTGCAAAAACTGAATCTGCCCTATCGTGTGATC ACATTGTGCGGCGGTGATATTGGTTTTTCCTCGGCAAAAACCTACGATATTGAAGTGTGGCTACCTGGCCAGCAGAAATA CCGCGAGATTTCTTCCTGCAGCAATTTTGAGGACTTTCAGGCGCGACGTTTGCAGGCGCGCTATCGCCCCAACAATTCCA AAAAGCCAGAACTTGTGCATACGCTAAATGGAAGTGGCTTGGCGGTAGGAAGAACCTTGGTCGCAATTTTGGAAAATTAC CAGCAAGCGGATGGCTCGGTACTCGTTCCCGAAGCGCTGCTCCCGTATATGGGCGGCGTTACCGTTTTACGGCCCACACC TTAA Protein sequence : MLDPKIIRGQLDFVAERLALRGMTLDTGLLTSLEEQRKGLQVQTEQLQSERNARSKAIGKAKAQGQDTSVLLAEVDTLGD QLSQCENQLKELMVRLQDVYYGLPNLPHESVPKGASEEDNVEVRRWGAPREFDFEPRDHVDIGEALGELDFEVAAKITGA RFVVMNGALARMHRALIQFMLDTHTSQNGYQEVYVPYVVNEDSLKGTGQLPKFGQELYRLEGEKAFYLIPTAEVPVTNLM RDEIVAEDELPKKFACHTPCFRSEAGAYGKDVRGMIRQHQFEKIELVQIVRPEDSYAALEALTGHAESILQKLNLPYRVI TLCGGDIGFSSAKTYDIEVWLPGQQKYREISSCSNFEDFQARRLQARYRPNNSKKPELVHTLNGSGLAVGRTLVAILENY QQADGSVLVPEALLPYMGGVTVLRPTP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-110 | 55 |
