Gene Information

Name : HDN1F_12170 (HDN1F_12170)
Accession : YP_003810453.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 1507524 - 1508012 bp
Length : 489 bp
Strand : -
Note : silverDB:HdN1F1600

DNA sequence : 
ATGGCAAAAAAGAACAGCGGTTCAGTTGCACCGAAAGAGCGTATCAATATTTCCTACAAACCGGCGACGGGAAACGCTAG
AGAAACCGTCGAACTCCCTTTTAAATTAGTCGTTCTTGGTGACTTCACCAACAAACAGGACGACCGTACCGTCGAAGACC
GCGCGCCCGTAGAAGTCAACAAGCACAACTTCGACGACGTGATGAAAGGGGCGAATCTCTCCCTGCAGTTTTCGGTAGAC
AATCACCTCAGCCAACAAGAAAACTCTGAAATTTCCGTAGACATTCCAGTGCAGTCGCTCAAGGATCTTGAACCCGACAG
CCTGATGAAATTGATCCCAGAGCTTCGCCGAGTTCACGAGCTAAGAGAGTCGCTCATGGCGCTCAAAGGGCCGCTTGGGA
ACAGTCCACAAATGCGTAGAACCATCATGGCAATGATACAAGACAAAGAGCAGCGCGGTCGATTGATGCAAGAAATCGGG
CTTCGCTAA

Protein sequence : 
MAKKNSGSVAPKERINISYKPATGNARETVELPFKLVVLGDFTNKQDDRTVEDRAPVEVNKHNFDDVMKGANLSLQFSVD
NHLSQQENSEISVDIPVQSLKDLEPDSLMKLIPELRRVHELRESLMALKGPLGNSPQMRRTIMAMIQDKEQRGRLMQEIG
LR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-28 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_12170 YP_003810453.1 hypothetical protein VFG2092 Protein 3e-34 46
HDN1F_12170 YP_003810453.1 hypothetical protein VFG2474 Protein 3e-33 45