|
Name : HDN1F_11600 (HDN1F_11600) Accession : YP_003810399.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Virulence Product : type I restriction-modification system DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 1435785 - 1438211 bp Length : 2427 bp Strand : + Note : silverDB:HdN1F1516 DNA sequence : ATGAACCACAGCGTACACAACAAACTTGTCTCATTTATCTGGAGCATCGCCGACGATTGCCTGCGCGACGTGTACGTGCG CGGCAAATACCGTGACGTTATCCTGCCGATGGTGGTATTGCGCCGCCTCGATACCTTGCTGGAGCCAACAAAAGAAGCCG TACTGGAAGAGGTCCGCTACCAGAAGGAAGAAATGCAAGCCACCGAGCTGGACGAAGAGCCGCTTAAAGAAGCCTCCGGC TACGTGTTCTACAACGTGTCCAAATGGACGCTCACCAGCCTGCACAACACCGCCACTAATAACCGCCAGATTCTGCTGGC CAACTTTGATGAATACCTCAATGGCTTCAGTGCCAACGTGCAGGAAATCATCGAGCGCTTTGAGCTGAAAAGCAAAATCC AGCACATGGCCAATAAAGACGTGCTGCTGGATGTGGTGGAAAAATTCATTTCCCCGAAAATCAACCTGACACCTGTGGCT GCCGAAGACCCGGATGGCTACAAATTACCCGCGCTTTCAAATCTGGGCATGGGTTATGTGTTTGAAGAACTGATCCGTAA ATTCAACGAAGAAAACAACGAAGAGGCCGGGGAACACTTCACGCCGCGTGAAGTAATCGAGCTGATGACCCACCTGGTGT TCGATCCGATCAAAGACAGCATTCCATTAACGCTGACCGTGTATGACCCGGCTTGCGGCAGTGGGGGAATGCTCACCGAA TCGCAAAATTTTATTGAAGAAAAGTATCCTGCCGATCCATCCGCGAAAAGTCAGCGCGATATCTACCTCTACGGCAAAGA AATCAACGACGAGACCTACGCCATCTGTAAATCCGACATGATGATCAAGGGCAACAACCCCGAGAACATCAAGGTCGGCT CCACCCTGTCCACCGATGAATTCGCCTCCCTGCGTTTTGACTTTATGCTCTCCAACCCGCCCTACGGCAAAAGCTGGGCA TCGGAGCAAAAATACATCAAAGACGGCAGTGACGTGATTGACCCGCGCTTTAAGGTCAAACTCAAAGACTATTGGGGCAA TATCGAGGAATGTGATGCCACACCGCGCTCCAGCGATGGCCAGCTGCTGTTCCTGATGGAAATGGTCAGCAAAATGAAAG ACCCTGGCGCAGGCACCAACGGCAGCCGTATTGCGTCGGTCCATAATGGTTCCAGCCTGTTTACTGGCGATGCCGGTGGT GGTGAGAGCAATATCCGCCGCTACATTATCGAAAACGACATGCTCGACGCCATTGTGCAATTGCCCAACAACCTGTTCTA CAACACCGGCATTACCACCTATATCTGGCTGCTTAATAACAACAAGCCTGAGTCCCGCAAGGGTAAGGTGCAGTTAATCG ATGCCAGCCTGCTGTATCGAAAGCTGCGCAAAAACCTCGGCAACAAGAACTGCGAATTTGCGCCGGAGCATATCGAGCAG ATTACCCGCGCCTACCTGGATTGCGCCGCCATTGAACGTGAACTGGATGGCTCTTTGCCTGAAGGGATGGGTGACCCAAT TGGCATCGCCAGCCAGGTATTCCGTAATGAAGATTTCGGCTACTACAAAGTCACCATCGAACGCCCCGACCGCCGCAAAG CCCAGTTCACAGCAGAGCGCATTGCAGGCTTACGTTTTGACAAGCAGTTAAGCGAAGTGATGGAGCACCTGTATGCCGAA TATGGCGACAAGCTTTACGAGAAGGGCTTCTTAAAATCCATCGAGAAAAACATCCTTGCCTGGTGTGAAGACAACGACAT CAGCCTGAACGCCAAGGCAAAAACCAAGCTGCTGGATGTGAAGCACTGGCTAGCTCTAAAAGCGGTTTACGAGACGGCAC AGGCGCTTATGGCTGCCATAGGTAAAGACGAATTCGATGACTTCAATCTGTTTAAAGATCAGGTGGATGCCGGGCTGAAG GCGCTTAAGGTCAAACTCTCTGCCACCGAAAAGAACGCCATCCTGAATGCGGTTAGTTGGTACGATGAATCTGCCGCTAA AGTGATCAAGAAAGTGGTAAAACTCAGCGGCGATAAGTTGGATGAAGTGCTGGAACGGTACGGCTGCACCCAAGCGCAAT TGCCGGATTTTGGGTTTTATCCAACCAACAAGAAGAATGAATACATTACCTATGAAACCAGCGCCGATCTGCGTGACAGT GAATCAGTTTCCTTGCTAAAGGACGATGAACCACAAAGCATTCATCAGTACTTTCTGGATGAAGTAAAGCCCCATGTAGA GGAATCCTGGATCAACCTTGATTCCGTCAAAATCGGCTATGAGATCAGCTTTAACAAATACTTCTATCGCCATAAGCCGC TGCGTTCTTTGGAAGATGTTGCGAAAGACATTATCAACCTGGAACAAAAGGCAGAGGGCTTGATCGCGCAGATTCTGGGT GTGGATATTGAGCAGGTTCAGGGGTGA Protein sequence : MNHSVHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRYQKEEMQATELDEEPLKEASG YVFYNVSKWTLTSLHNTATNNRQILLANFDEYLNGFSANVQEIIERFELKSKIQHMANKDVLLDVVEKFISPKINLTPVA AEDPDGYKLPALSNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDSIPLTLTVYDPACGSGGMLTE SQNFIEEKYPADPSAKSQRDIYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFASLRFDFMLSNPPYGKSWA SEQKYIKDGSDVIDPRFKVKLKDYWGNIEECDATPRSSDGQLLFLMEMVSKMKDPGAGTNGSRIASVHNGSSLFTGDAGG GESNIRRYIIENDMLDAIVQLPNNLFYNTGITTYIWLLNNNKPESRKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHIEQ ITRAYLDCAAIERELDGSLPEGMGDPIGIASQVFRNEDFGYYKVTIERPDRRKAQFTAERIAGLRFDKQLSEVMEHLYAE YGDKLYEKGFLKSIEKNILAWCEDNDISLNAKAKTKLLDVKHWLALKAVYETAQALMAAIGKDEFDDFNLFKDQVDAGLK ALKVKLSATEKNAILNAVSWYDESAAKVIKKVVKLSGDKLDEVLERYGCTQAQLPDFGFYPTNKKNEYITYETSADLRDS ESVSLLKDDEPQSIHQYFLDEVKPHVEESWINLDSVKIGYEISFNKYFYRHKPLRSLEDVAKDIINLEQKAEGLIAQILG VDIEQVQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1769 | NP_231404.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 0.0 | 76 |
| VC0395_A1367 | YP_001217310.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 0.0 | 76 |
| VPI2_0017c | ACA01834.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 0.0 | 76 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HDN1F_11600 | YP_003810399.1 | type I restriction-modification system DNA methylase | VFG1102 | Protein | 0.0 | 76 |
