Gene Information

Name : HDN1F_10490 (HDN1F_10490)
Accession : YP_003810289.1
Strain : gamma proteobacterium HdN1
Genome accession: NC_014366
Putative virulence/resistance : Virulence
Product : sugar transferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 1309267 - 1309833 bp
Length : 567 bp
Strand : +
Note : silverDB:HdN1F1373

DNA sequence : 
TTGTTTGCGAAATATGCGCTGGATCGAGTAGGGGCGGGGTTGTTGCTGATTTTTTTGCTGCCGCTGATGATCGTGATTGG
GGGGTGCGTAAGGCTGACTTCTTCGGGGGCTGCGATTTACTGGTCGACGCGTATTGGAGCTAACAACCGCCCCTTTCAGA
TGCCGAAGTTTCGCACCATGCGTGCGGATACCCCAGCAGTTGCTACACATATGCTTGCGGATCCATCGGTTTGGTTGAGC
CCAATCGGTGGGTTTCTACGCAAAACCAGTTTGGACGAGCTGCCTCAGCTCTGGAGCATTTTGATAGGAAATATGAGTTT
CGTGGGGCCTCGGCCAGCGCTGTTCAACCAGTATGACCTGATTGAGCAGCGTACCCAAGTAGGGGTGCATAGGTTATTGC
CCGGCTTGACTGGTTGGGCACAAGTAAATGGCCGAGATGAACTGCTTGTTCAGGATAAAGTCAAACTGGATCATGAATAC
TTGCTACGGCGTTCATTTCGTTTTGATTTCTGGATCTTAATACTGACTATTTTTCGTGTCTTGAAACGCGATGGCGTTCT
ACACTGA

Protein sequence : 
MFAKYALDRVGAGLLLIFLLPLMIVIGGCVRLTSSGAAIYWSTRIGANNRPFQMPKFRTMRADTPAVATHMLADPSVWLS
PIGGFLRKTSLDELPQLWSILIGNMSFVGPRPALFNQYDLIEQRTQVGVHRLLPGLTGWAQVNGRDELLVQDKVKLDHEY
LLRRSFRFDFWILILTIFRVLKRDGVLH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 3e-33 48
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 4e-32 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDN1F_10490 YP_003810289.1 sugar transferase VFG1309 Protein 2e-32 48
HDN1F_10490 YP_003810289.1 sugar transferase VFG1369 Protein 2e-31 48