Gene Information

Name : Deba_2315 (Deba_2315)
Accession : YP_003808271.1
Strain : Desulfarculus baarsii DSM 2075
Genome accession: NC_014365
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2563424 - 2564200 bp
Length : 777 bp
Strand : +
Note : COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: B8FK35 flagellar biosynthetic protein FliP;

DNA sequence : 
ATGATCACCAGCCCGCCGCGACCTTCGGCCCTGGCCGCGCTGACCCTGGCCGTGGCCCTGGCTGGCGCGTCAACGGCCCT
GGCCCAGGAGGGCGCGCCGCTGAACCTGCCCTCGATCACCCTGGGCGCGCAAAACGCCGCCTCGCCCGAACAGGTCTCCA
CGGCTCTGCAAATCGTCATTTTGCTGACGGTGCTGACCCTGGCCCCGGCCATCCTGGTGATGACCACCAGCTTCGTGCGC
ATCGCGGTGTCATTTTCCCTTTTGCGCAACGCCCTGGGCGCGCCCCAGGTGCCGCCGACCCAGATCATCGTCGGCTTGTC
GCTGTTTTTGACGTTTTTCATCATGGCCCCGGTCTTTGATCAGGTCCACGACAAGGCCCTCAAGCCCTACCTCGACGGAG
CCATCAGCCAGAGCGCTTTTTTCGAGGAAGCGGCCAAGCCCATGCGCGAGTTCATGCTCAAGCAGACGCGCAAGAAAGAC
CTGGGCCTGTTCATGAAGATCGCCGGCGAGGACCGCCCGCGCAACGAGCAAGACGTGACCATGAGCGCCCTGGTCCCGGC
CTTTGTCATCAGTGAACTGCGCACGGCCTTCGAGATCGGTTTTTTACTTTACGTGCCGTTTCTGGTCATCGACATGGTGG
TGGCCTCGGTGTTGTTGTCGATGGGCATGATGATGCTGCCGCCGGTGATGATCTCGCTGCCGTTCAAGCTGATGCTTTTC
GTGCTGGTGGACGGCTGGTACCTGCTGGTGGGCTCGCTTGTGCGGTCCTTCGGCTGA

Protein sequence : 
MITSPPRPSALAALTLAVALAGASTALAQEGAPLNLPSITLGAQNAASPEQVSTALQIVILLTVLTLAPAILVMTTSFVR
IAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFDQVHDKALKPYLDGAISQSAFFEEAAKPMREFMLKQTRKKD
LGLFMKIAGEDRPRNEQDVTMSALVPAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPFKLMLF
VLVDGWYLLVGSLVRSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-34 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-33 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-32 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-31 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-32 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-32 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-32 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-32 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-30 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG2338 Protein 8e-50 56
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-51 56
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-52 55
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG1259 Protein 4e-52 54
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG0394 Protein 5e-36 46
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-36 43
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-32 43
Deba_2315 YP_003808271.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-34 42