Gene Information

Name : Spirs_3299 (Spirs_3299)
Accession : YP_003804989.1
Strain : Spirochaeta smaragdinae DSM 11293
Genome accession: NC_014364
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3544422 - 3545192 bp
Length : 771 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: gau:GAU_0844 macrolide ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: macrolide ABC

DNA sequence : 
ATGCCGATTATCGAAATGCACGGGGTAAAGCGGTTCTACGTCATGGGAGATATCACCGTAAAGGCGTTGCGGACCATCGA
CCTCTCCATAGAACAAGGCGAGTTTGTTGCGGTCATGGGCCCATCCGGTTCGGGAAAGTCCACCTTGATGAATATCATCG
GCTGCCTGGATAAGCCTACGGACGGGGTTTACATGCTCGACGGCTTGAACACGAAAGAGGCGAAGATGGATGAATTCGCC
GATATCAGGAATCAGAAGATCGGCTTTGTGTTTCAAGGCTTTAATCTCCTTTCGAGAACGACCGCCGTGGAAAATGTCGA
ACTGCCGCTCTTTTACAACAGAAAAAAGAGGATCTCCGATTCATTGAAAAGGGCGGAAGCAGCCTTGAAAAAGGTGGGGC
TTGGAACGCGGCTTGACCACGTTCCGTCTCAACTCTCGGGAGGGCAACAGCAAAGGGTGGCCATTGCCCGGGCATTGGTA
AACGACCCCGCCTTCATCCTTGCGGACGAACCGACCGGCAACCTTGATACCGAGACCACCATTGAAATCATGGCCCTGTT
TCAGGAGCTCAACGATCAGGGAATCACCATTGTGATGGTGACGCACGAGCCGGATATGGCCTGTTATGTGAAAAGAATCA
TCACCATGCAGGACGGACTTGTTGTCTCCGACCGCCAAGTGAACGATAGGAAAAAGGCCTCCGAGGATCTGCAGGCCTGG
CGGGTAAGCCACAGCCAGCTCTATAAAGAACAGGCGGAGGCACTTCCATGA

Protein sequence : 
MPIIEMHGVKRFYVMGDITVKALRTIDLSIEQGEFVAVMGPSGSGKSTLMNIIGCLDKPTDGVYMLDGLNTKEAKMDEFA
DIRNQKIGFVFQGFNLLSRTTAVENVELPLFYNRKKRISDSLKRAEAALKKVGLGTRLDHVPSQLSGGQQQRVAIARALV
NDPAFILADEPTGNLDTETTIEIMALFQELNDQGITIVMVTHEPDMACYVKRIITMQDGLVVSDRQVNDRKKASEDLQAW
RVSHSQLYKEQAEALP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-31 47
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 7e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spirs_3299 YP_003804989.1 ABC transporter NC_012469.1.7686878. Protein 2e-52 55
Spirs_3299 YP_003804989.1 ABC transporter NC_008702.1.4606598. Protein 1e-46 51
Spirs_3299 YP_003804989.1 ABC transporter CP001581.1.gene798.p Protein 7e-35 43
Spirs_3299 YP_003804989.1 ABC transporter CP001581.1.gene598.p Protein 4e-37 41