Gene Information

Name : Spirs_0182 (Spirs_0182)
Accession : YP_003801933.1
Strain : Spirochaeta smaragdinae DSM 11293
Genome accession: NC_014364
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 188642 - 189424 bp
Length : 783 bp
Strand : +
Note : COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transporters ATPase components; InterPro IPR003593:IPR003439:IPR017871; KEGG: aoe:Clos_0320 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: ABC transporter related; PFAM: ABC tran

DNA sequence : 
ATGGTCATTGAGGCTGATAAGCTTTGTCTTGGGTACGGCGGCAAACCGATTGTTAAAGATCTCTCTCTTTCCGTGCCTGC
CGGCTCCTGGGCATCAATCATCGGTCCCAACGGCTGCGGGAAATCGACGCTTCTGAAGGCCCTTTCCCGCAACCTGAAGC
CTGTTTCCGGTTCCGTTAGGGTTATGGACCGGCCCTTGGATAGTTACGGAGGACGGGGCCTTGCCCGAACCATGGCTTTT
CTCGCCCAAACTCCTCAAATCCCCGATTATTTTTCCGTGAAGGAACTGGTGGGCTATGGCAGATATCCCCATACCGGATG
GTTCGGCAGCTTTCGTCCCCGGGATCGGGAGGTGGTGGAACAGGCTCTGGAGGCAACGGACATGCTTGACTTTAGCGAGC
GCGAGGTTGCAAGCCTTTCCGGTGGTGAACGCCAGCGGGCCTGGATTGCCATGGCCCTGGCTCAGGAGGCGGAACTCCTG
CTTTTCGACGAGCCGACGACTCATCTCGATATTGCCTACCAGTTCCAGATCCTCGAGTTGATCGACAGGTTGCGAAGGGA
GATGGGGCGGACGGTGGTGACGGTACTCCATGATCTCAACCAGGCGGCCCGTTACTCCGACCAGCTTTTTGTGATGAAAG
ACGGTAGGATTTTTGCTACCGGGGAACCCTCGGTGGTCCTTACCCCTCCGCTCCTTGGGGATGTCTTTTCCATCGATGTG
CGGCTCCTGCAGGACGAGGAACATGATTGTCCCTTTGTCGTTCCTCTGGGAGGAAAACAGTGA

Protein sequence : 
MVIEADKLCLGYGGKPIVKDLSLSVPAGSWASIIGPNGCGKSTLLKALSRNLKPVSGSVRVMDRPLDSYGGRGLARTMAF
LAQTPQIPDYFSVKELVGYGRYPHTGWFGSFRPRDREVVEQALEATDMLDFSEREVASLSGGERQRAWIAMALAQEAELL
LFDEPTTHLDIAYQFQILELIDRLRREMGRTVVTVLHDLNQAARYSDQLFVMKDGRIFATGEPSVVLTPPLLGDVFSIDV
RLLQDEEHDCPFVVPLGGKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-48 47
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-48 47
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-48 47
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-48 47
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-45 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-43 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-48 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-48 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-48 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spirs_0182 YP_003801933.1 ABC transporter BAC0164 Protein 6e-43 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spirs_0182 YP_003801933.1 ABC transporter VFG1042 Protein 5e-43 46
Spirs_0182 YP_003801933.1 ABC transporter VFG0925 Protein 1e-49 44