Gene Information

Name : Spirs_1553 (Spirs_1553)
Accession : YP_003803274.1
Strain : Spirochaeta smaragdinae DSM 11293
Genome accession: NC_014364
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1669839 - 1670774 bp
Length : 936 bp
Strand : +
Note : COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011932:IPR004107:IPR002104; KEGG: tde:TDE1205 integrase/recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase/recombinase XerD; TIGRFAM: tyr

DNA sequence : 
ATGACCGGTAAGACGCTTTTGCGGGATTATGATGCTCATCTCGGTGCCGTTCTTTCCTTGGCACCCCTAAGCCGGGAGAG
CTATGTTTCCGCTATCTCACGTCTTCTCGGCTGGCTTGAGGAAGAAGGAAAGAACCCTTTCTCGGCCAGTGATGCCGATT
TGGTCGACTATCTTACCCTCCGTTTTGAGGAGGGAAGCGATAAACACACCATTGCCAAATTGGTGTCGATCATGCGAAGT
TTTTTTGATTTTCTTGTTTCGGAGGAGTACCGGCAGGATAATCCTGCACGGATGGTAGACGCTCCCAAGCTGGGACGCAG
TCTCCCTTCGGTATTGAGCATAGAAGAGGTTGAAGCCTTCCTTAATGCCATCCCTCTGGAAACTCCTGAGGGGCTGCGGG
ATCGTGCGCTTTTCGAACTCATCTATTCGGCCGGCTTGCGGGTTTCCGAGGCTGTAGGCCTCTCAGCTGGATCGCTTTAC
CTTCGGGATGGGATTATCAGGGTTACAGGAAAGGGTTCGAAGCAACGTGTCATCCCCTTAGGGGATGAGGCCCGAAAATG
GATCGGACGCTATCTTACCGATGCCCGGCCCCTTTTAGCAAAGAGTTTTCATCCCACAGATGCTTTATTCCTCAGCAGAA
GGGGAACACCCCTCTCCCGTAAAAACGTGTGGAAGCGTTTTAAACAGTTCTCGCTTCTTGCCGGGGTCGATGGAAAGGTA
CACACCCTGCGTCACAGCTTCGCCACGCATTTGCTTGCCGGGGGAGCCGATCTTCGTTCCGTTCAGGAACTGCTTGGCCA
TTCCGATATCTCGACCACCCAGATCTACACCCATATCGATGATCCGACCCTCCGTAATACCCACGAACAGTTTCATCCTC
GGGGCTCTTGTGCTGCCTCTCATGATGAATCGTCGGAGGGCTATCCCGATGTATAG

Protein sequence : 
MTGKTLLRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLTLRFEEGSDKHTIAKLVSIMRS
FFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAFLNAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLY
LRDGIIRVTGKGSKQRVIPLGDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAGVDGKV
HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPTLRNTHEQFHPRGSCAASHDESSEGYPDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 3e-51 42
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 3e-51 42